Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J06
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    28   2.1  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   6.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   6.4  

>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 452 KLFCKYITFFINLKRSFYCRNELL 523
           KL+  YI FF    RS  CRN LL
Sbjct: 171 KLYFYYILFFEKCNRSVECRNTLL 194


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = -3

Query: 357 LTKSFNLYTRSCSS*VPQVNLT-SPPSSVFNVTVY------NTFSELALGELVTSNFHST 199
           +TK  +L   + +  VP V  + SP  S F V++       N F   + GELV  NF   
Sbjct: 398 ITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSENVFDPTSSGELVIHNFGFL 457

Query: 198 SITLGKTLTIL*EAI 154
           S +  + + +L E++
Sbjct: 458 SFSASRPMNLLVESV 472


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 97  SGISKLHSKHDFKTFKHLGDGFSQY 171
           SGIS+  S   FK F HL DG S++
Sbjct: 293 SGISR-DSSSPFKRFPHLSDGSSRF 316


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 288 PPSSVFNV-TVYNTFSELALGELVTS 214
           P +S  N+  +YNTFS++A+GE + S
Sbjct: 764 PSNSPVNMQAIYNTFSKMAVGEPMES 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,457
Number of Sequences: 5004
Number of extensions: 49036
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)