Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J06
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase pro...    28   8.0  

>U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical
           protein C33F10.4b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +2

Query: 71  KTSFVLLQKVEYLNYILNMILRHSSI*AMASHNIVKVLPNVIDVEWKLEVTSSPNASSEN 250
           +TSF     +   N ++N+ L  S    ++   + K + NV +V+    V   P+ SS+N
Sbjct: 192 ETSFT--STIRLPNSLINL-LSGSPDTVISVPQVFKSILNVPNVQEDHIVMCIPSTSSDN 248

Query: 251 VLYTVTLKTDDGGDVRFTCGTQELQDLVYKLKDLVRH--CERTKCELS*EKVGVLIL 415
           +L   +   D       T GT+  + L +  + L  H   E +K +    K G+LIL
Sbjct: 249 ILVKASCAKDGTSYHTLTIGTESSRSLTFLAEQLRLHLIVEMSKLKSRPAK-GILIL 304


>Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical
           protein F15A2.2 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 653 VSNIYCVYKLIISTWYY*IEKSCSFVLLNITI*HISAN 540
           +S IYC   ++ ++W + ++K+C    L +T   + AN
Sbjct: 53  LSEIYCHGPILTNSWQFGLQKTCPGDKLKVTAKEVLAN 90


>AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase
           protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 653 VSNIYCVYKLIISTWYY*IEKSCSFVLLNITI*HISAN 540
           +S IYC   ++ ++W + ++K+C    L +T   + AN
Sbjct: 53  LSEIYCHGPILTNSWQFGLQKTCPGDKLKVTAKEVLAN 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,846
Number of Sequences: 27780
Number of extensions: 272943
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)