Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J05
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   149   5e-37
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   4.6  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   8.0  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.0  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  149 bits (361), Expect = 5e-37
 Identities = 81/149 (54%), Positives = 98/149 (65%)
 Frame = +2

Query: 212 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 391
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 392 LIELGAEVQWSSSNIYSTQDXAAAALVCRXNTPSMPSREKLMTSIFGCIXXXLDLXXXEK 571
           L+ LGAEV WSS NIYSTQD AAAA +     P    + +       CI   L      K
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAA-IAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGK 124

Query: 572 PLNMILDDXG*LXXT*STLKYPDLLKDVK 658
           PLNMILDD G L       ++P+LL D++
Sbjct: 125 PLNMILDDGGDLTALVHE-RHPELLVDIR 152



 Score =  101 bits (242), Expect = 1e-22
 Identities = 56/114 (49%), Positives = 67/114 (58%)
 Frame = +1

Query: 487 PIYAFKGETDDEYIWVYXXKXGSXXDXKASQYDLG*XGVTXXNLVHP*VPXXXXXXXXXX 666
           P++A+KGET++EY+W    +  S    K     L   G     LVH   P          
Sbjct: 97  PVFAWKGETEEEYLWCIEQQLKSFPSGKPLNMILD-DGGDLTALVHERHPELLVDIRGIS 155

Query: 667 XXXXXPGVHNLXXMFRXXLLKVPAINVNDSVTKSKFDNLYGCRESLLDGIKRAT 828
                 GVHNL  MF+   LKVPAINVNDSVTKSKFDNL+GC+ESL+DGIKRAT
Sbjct: 156 EETTT-GVHNLYKMFKENKLKVPAINVNDSVTKSKFDNLFGCKESLVDGIKRAT 208


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 588 WMXGGDXTKLSPPLSTPI 641
           W   GD T  SPP+S P+
Sbjct: 256 WKRNGDYTNASPPVSAPL 273


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -1

Query: 343 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLXY 176
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+ +
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 253 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 432
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 433 H 435
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,222
Number of Sequences: 5004
Number of extensions: 50961
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)