Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J05
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888     67   2e-11
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125...    29   6.4  
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    29   6.4  
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110...    28   8.4  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 33/48 (68%), Positives = 34/48 (70%)
 Frame = +1

Query: 685 GVHNLXXMFRXXLLKVPAINVNDSVTKSKFDNLYGCRESLLDGIKRAT 828
           GV  L  M     L  PAINVNDSVTKSKFDNLYGCR SL DG+ RAT
Sbjct: 175 GVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRAT 222



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +2

Query: 278 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELG 406
           MPGLMACR ++ P++  KGARI+GSLH T+Q AVLIETL  LG
Sbjct: 1   MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALG 43



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 400 IGSRGTMVQQ*HL*YTRRXRSCTGLPXEYPIYAFKGETDDEYIW 531
           +G RG +V   HL +    R          ++A+KGET +EY W
Sbjct: 42  LGRRGPLVLLQHLLHAGPRRRPPSPRDSAAVFAWKGETLEEYWW 85


>09_06_0342 +
           22410674-22411060,22412219-22412299,22412376-22412579,
           22412765-22412959,22413064-22413228,22413501-22413761,
           22413908-22414126,22414285-22414504,22414591-22414613,
           22414728-22414766
          Length = 597

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 203 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 382
           +PP  +  ++    GR+     EKE   L   +R+   A+IL G R  G+ ++ V+ A +
Sbjct: 33  RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89

Query: 383 IETLIELGAEVQW 421
            E +  L  E  W
Sbjct: 90  NEVIAALAREAGW 102


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +2

Query: 251 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 412
           KE+M    E PG++  R     + +++   IA  LH  V      QTA L+  +  L  +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255

Query: 413 VQWSSSNIYSTQD 451
           V+  S  + ST+D
Sbjct: 256 VEELSKKLCSTED 268


>09_04_0606 +
           18909065-18909218,18909674-18909737,18910895-18911023,
           18913680-18913830,18914369-18914491,18915638-18915711,
           18916048-18916591,18916948-18917085,18917159-18917203
          Length = 473

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 491 MGYSYGKPVQLRXRLVYYKCYCWTIVPLLPILLKSQ*EPLFVLSCVSCRLFWHL 330
           M Y       +  +L   +C  W  VPLL  L+  Q EP  +    S  +FW L
Sbjct: 305 MDYGCWNDFNVLYKLTCRECKDWRCVPLLWYLIMVQLEPSELPMAFSKAVFWAL 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,035
Number of Sequences: 37544
Number of extensions: 321760
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)