Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J03
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.33 
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    32   0.75 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.3  
07_03_1067 + 23728642-23728690,23728832-23729010                       29   4.0  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    28   9.3  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXPXXGSPP 890
           PP    P   PP     G    PP K  P   PP  P    PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
 Frame = +3

Query: 765 PXXXXPXGXPPXXKXGGXXXXPPXKXX--PXXXPPGXPXXGSPP 890
           P    P G PP     G    PP K    P   PPG    G PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = +2

Query: 653 PKGXXPPLXXXPKXAXLXXKXXGXPPXGX*NKKRXXPPP-GXXPXGXXPXXXKXGGXXXX 829
           P    PP    PK A       G PP          PPP G  P    P   K GG    
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380

Query: 830 P 832
           P
Sbjct: 381 P 381



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = -3

Query: 599 PPXPKXXFPXFXPYXWGNPVXPPXXXPXPXPXXGXXFXXXXSLTXXPAGGPITKXPXPGV 420
           PP P    P   P   G P  PP   P P P               P GG       PGV
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGV 395


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 901 GXXXGGEPXXGXPGGXXXGXFXXGGXXXXPPFXXXGGXPXGXXXXG 764
           G   GG P  G PGG   G F  G      P    GG P G    G
Sbjct: 530 GGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGG 575



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 901 GXXXGGEPXXGXPGGXXXGXFXXGGXXXXPPFXXXGGXP 785
           G   GG P  G PGG   G F  G     P     GG P
Sbjct: 539 GGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVP 577


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
 Frame = +3

Query: 765 PXXXXPXGXPPXXKXG-GXXXXPPXKXXPXXXPPGXPXXGSPPXXXPXXXXXETXPQ 932
           P    P G PP  +   G    P     P   PP  P  G PP   P        PQ
Sbjct: 22  PPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQ 78


>07_03_1067 + 23728642-23728690,23728832-23729010
          Length = 75

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
 Frame = +3

Query: 780 PXGXPPXXKXGGXXXXPPXKXXPXXXPP--GXPXXGSPPXXXPXXXXXETXPQ 932
           P G PP     G    PP    P   PP  G P  G PP         +  PQ
Sbjct: 9   PVGVPPQQGYPGKDGYPPPGYPPAGYPPAQGYPPAGYPPQQGYPPPYAQPPPQ 61


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
 Frame = -3

Query: 623 PXXGGXXXPPXPKXXFPXFXPY----XWGNPVXPPXXXPXPXP 507
           P  G    PP P    P   PY      G P  PP   P P P
Sbjct: 67  PQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPAQPPPPPPPPQP 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,301
Number of Sequences: 37544
Number of extensions: 258002
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)