Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J03
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.17
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.17
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.17
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.22
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 4.8
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.8
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 4.8
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.3
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 28 8.3
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = -1
Query: 622 PVXGGXXRPPX--PKXXSPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXPPGG 449
P+ GG PP P P P GG P P P G G P PPGG
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 448 P*XXPPXP 425
PP P
Sbjct: 768 CPPPPPPP 775
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXP--XXGSPPXXXP 902
PP P G PP G PP P PP P G PP P
Sbjct: 742 PPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXX-----SPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXP 458
P+ GG PP P P P GG P P P GG P P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----PPPP 776
Query: 457 PGGP*XXPPXP 425
PGG PP P
Sbjct: 777 PGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = -1
Query: 622 PVXGGXXRPPX--PKXXSPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXPPGG 449
P+ GG PP P P P GG P P P G G P PPGG
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 448 P*XXPPXP 425
PP P
Sbjct: 768 CPPPPPPP 775
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXP--XXGSPPXXXP 902
PP P G PP G PP P PP P G PP P
Sbjct: 742 PPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXX-----SPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXP 458
P+ GG PP P P P GG P P P GG P P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----PPPP 776
Query: 457 PGGP*XXPPXP 425
PGG PP P
Sbjct: 777 PGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = -1
Query: 622 PVXGGXXRPPX--PKXXSPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXPPGG 449
P+ GG PP P P P GG P P P G G P PPGG
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 448 P*XXPPXP 425
PP P
Sbjct: 351 CPPPPPPP 358
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXP--XXGSPPXXXP 902
PP P G PP G PP P PP P G PP P
Sbjct: 325 PPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXX-----SPXXPXIXGGTXFXPLXXXPXPXPXGGXFFXXGIL*PXXP 458
P+ GG PP P P P GG P P P GG P P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----PPPP 359
Query: 457 PGGP*XXPPXP 425
PGG PP P
Sbjct: 360 PGGFKGGPPPP 370
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.22
Identities = 32/123 (26%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Frame = +3
Query: 549 PPXIXGKXGEXXFGXGGRXXPPXTGXXTPFKKXFXXKXPPXXXXXPQXGXXSXXKXXXXP 728
PP K G G PP G P + P P G P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 729 XXGXKIKKGXXPPXXXXPX---GXPPXXKXGGXXXXPPXKXX-PXXXPP-GXPXXGSPPX 893
+G P P G PP G P K P PP G P GSPP
Sbjct: 298 PPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 356
Query: 894 XXP 902
P
Sbjct: 357 GRP 359
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXPXXGSPPXXXP 902
PP P G PP + P P G P GSPP P
Sbjct: 421 PPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRP 467
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 632 GXXPXXGGXXXPPXPKXXFPXFXPYXWGNPVXPPXXXPXPXPXXG 498
G P G PP P P P G+P PP P P P G
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGG 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.22
Identities = 32/123 (26%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Frame = +3
Query: 549 PPXIXGKXGEXXFGXGGRXXPPXTGXXTPFKKXFXXKXPPXXXXXPQXGXXSXXKXXXXP 728
PP K G G PP G P + P P G P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 729 XXGXKIKKGXXPPXXXXPX---GXPPXXKXGGXXXXPPXKXX-PXXXPP-GXPXXGSPPX 893
+G P P G PP G P K P PP G P GSPP
Sbjct: 319 PPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 377
Query: 894 XXP 902
P
Sbjct: 378 GRP 380
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXPXXGSPPXXXP 902
PP P G PP + P P G P GSPP P
Sbjct: 442 PPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRP 488
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 632 GXXPXXGGXXXPPXPKXXFPXFXPYXWGNPVXPPXXXPXPXPXXG 498
G P G PP P P P G+P PP P P P G
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGG 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.22
Identities = 32/123 (26%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Frame = +3
Query: 549 PPXIXGKXGEXXFGXGGRXXPPXTGXXTPFKKXFXXKXPPXXXXXPQXGXXSXXKXXXXP 728
PP K G G PP G P + P P G P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 729 XXGXKIKKGXXPPXXXXPX---GXPPXXKXGGXXXXPPXKXX-PXXXPP-GXPXXGSPPX 893
+G P P G PP G P K P PP G P GSPP
Sbjct: 304 PPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 362
Query: 894 XXP 902
P
Sbjct: 363 GRP 365
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXPXXGSPPXXXP 902
PP P G PP + P P G P GSPP P
Sbjct: 427 PPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRP 473
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 632 GXXPXXGGXXXPPXPKXXFPXFXPYXWGNPVXPPXXXPXPXPXXG 498
G P G PP P P P G+P PP P P P G
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGG 293
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXXSPXXPXIXGG-TXFXPLXXXPXPXPXG 500
PV G PP P P P + GG PL P P P G
Sbjct: 764 PVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPG 805
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 599 PPXPKXXFPXFXPYXWGNPVXPPXXXPXP 513
PP P+ FP P+ G + PP P P
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPP 325
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 599 PPXPKXXFPXFXPYXWGNPVXPPXXXPXP 513
PP P+ FP P+ G + PP P P
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPP 325
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXXSPXXPXIXGG-TXFXPLXXXPXPXPXG 500
PV G PP P P P + GG PL P P P G
Sbjct: 764 PVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPG 805
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXXSPXXPXIXGGTXFXPLXXXPXPXPXGG 497
P GG PP P P GG + PL P P G
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVPTPSNG 823
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +3
Query: 762 PPXXXXPXGXPPXXKXGGXXXXPPXKXXPXXXPPGXPXXGSPP 890
P P P + G PP K PPG P PP
Sbjct: 125 PGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPP 167
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -1
Query: 622 PVXGGXXRPPXPKXXSPXXPXIXGGTXFXPLXXXPXPXPXGG 497
P GG PP P P GG + PL P P G
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVPTPSNG 823
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,470,073
Number of Sequences: 27780
Number of extensions: 192463
Number of successful extensions: 456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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