Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J02
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 182 8e-47
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 109 5e-25
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 58 2e-09
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 48 2e-06
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 38 0.003
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 30 0.39
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 28 1.6
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 28 2.1
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 2.1
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 4.8
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 27 4.8
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 6.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 8.4
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 182 bits (442), Expect = 8e-47
Identities = 92/190 (48%), Positives = 131/190 (68%)
Frame = +3
Query: 261 VRGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLF 440
V + M+GL FISD+R+ + + E KR+N ELA IR+KF+ TL Y +KKYV KLL+
Sbjct: 2 VASNNMKGLRAFISDLRSLEHDDEE-KRVNVELAKIRAKFQSS-TLSAYDRKKYVSKLLY 59
Query: 441 IFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRN 620
I++LG+ I FGHMEA LLS KYSEK IGYL +++L+N N +L+KL+I SIK DL S +
Sbjct: 60 IYMLGYPITFGHMEAAKLLSGTKYSEKLIGYLAVALLLNENHELMKLVINSIKKDLLSHD 119
Query: 621 PIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPEIIP 800
+ +LAL IANIG +++ E +I KLL+S ++V+Q +AL LL ++RK P++I
Sbjct: 120 SLQNSLALHTIANIGGRELCETVYYDIYKLLMSASNENIVRQKSALALLHIYRKFPDLI- 178
Query: 801 GGEWTSRIII 830
EW I++
Sbjct: 179 NPEWFEPIVM 188
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 109 bits (262), Expect = 5e-25
Identities = 58/173 (33%), Positives = 97/173 (56%)
Frame = +3
Query: 276 MRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLG 455
M L FI +R K+ E I KE A IR + D ++K V KLL++FLLG
Sbjct: 30 MSSLKSFIKAVRASKTTAEEHTTILKESAQIRKNIRQGSN-DMRMRRKNVAKLLYLFLLG 88
Query: 456 HDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHVN 635
FG +E + LLSS+++ +K++GYL +L++ N +++ L+ S++NDL+SR+ V
Sbjct: 89 EPTHFGQIECLKLLSSSRFMDKRLGYLAAMLLLDENQEVLTLLTNSLQNDLKSRDKFIVG 148
Query: 636 LALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPEI 794
LAL N+ ++A +I +L + + + + A LC LR+ +K P++
Sbjct: 149 LALSAFGNVAGPELARDLSNDIAEL--CSNHHNYISKKAVLCALRVIQKEPDL 199
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/133 (26%), Positives = 67/133 (50%)
Frame = +3
Query: 399 DGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIK 578
D K + + KL ++ +LG DI + + V ++SS+K +KQ GYL ++D++
Sbjct: 40 DADLKSEAILKLAYLEMLGVDISWASFQIVEVMSSSKILQKQKGYLAAVQSFKPDTDVLM 99
Query: 579 LIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAAL 758
L +K DL S + LA+ +++ + +A ++ L++ ++ V++ L
Sbjct: 100 LTTNLLKKDLMSSKVPEITLAIDGLSHFSTLGLARDLYRDV--LILLNHSVPYVRKRTIL 157
Query: 759 CLLRLFRKSPEII 797
L RL + PE I
Sbjct: 158 LLYRLCLQYPEAI 170
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 48.0 bits (109), Expect = 2e-06
Identities = 28/115 (24%), Positives = 60/115 (52%)
Frame = +3
Query: 453 GHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHV 632
G+D+ ++ + SN K++ YL++ + + K ++ I ND+ S NP+
Sbjct: 45 GYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSNPMIR 104
Query: 633 NLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPEII 797
+LAL+ + ++ K+ A I +LL DT V+++AA+ + +L+ +++
Sbjct: 105 SLALRTLTSVNIKNFWVAAMDPIVRLL--DDTDPYVRKTAAIGIAKLYSYDKKMV 157
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/132 (20%), Positives = 61/132 (46%)
Frame = +3
Query: 381 KGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNT 560
KG + Y++ V + + +G D+ + + L++ + K++ YL++ T
Sbjct: 24 KGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLINYAKT 83
Query: 561 NSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVV 740
+ DL L + + D + NP LA++ + I + + K L D V
Sbjct: 84 HPDLCILAVNTFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKAL--KDEHPYV 141
Query: 741 KQSAALCLLRLF 776
+++AA+C+++++
Sbjct: 142 RKAAAVCVVKMY 153
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 159 KANYKNPV*NFNSYRPSLRFNHEDERPPF 73
K + K+P+ NF++ P+ FN E PPF
Sbjct: 833 KPSLKSPLFNFSADAPTFTFNKPSETPPF 861
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 382 RVIKL*MDIKRRSMCVNFCLYFCSDMISTSGTWKQ*TYFHPINTPKNRLDTF 537
R+++L +D R+S+C FC D + W YF+ + + +LD F
Sbjct: 311 RILRLVLDDSRKSVCFGFCYV---DTLKILQKWGSGCYFYGLGNDE-QLDEF 358
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 543 SVLVNTNSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLL 713
+V+ N++ L + +Q + NP+H N L + D+A F + IPK +
Sbjct: 139 NVIHNSSRILGQYTLQVLPEGTAKINPLHENYCLNSLRKDQYVDLAIQFNSTIPKYI 195
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 295 KTASPRIPSPLTAGILPSDLSNTSFKPFLYTFL 197
K A +PSP + LPS+LS+T +K +L
Sbjct: 528 KNALHSMPSPTSLANLPSNLSDTQYKKLYNLYL 560
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 4.8
Identities = 26/68 (38%), Positives = 32/68 (47%)
Frame = +3
Query: 345 INKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQ 524
INK L+N K + T G K+ V L F+FLL + E VN SSN E
Sbjct: 326 INKFLSNPLKKERQIITFMGDFKRCVVESLCFLFLLLTNQPRFTDELVNFKSSN---EMM 382
Query: 525 IGYLFISV 548
+ LFI V
Sbjct: 383 MNLLFIHV 390
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 306 IRNCKSKEAEIKRINKELANIRSKFKGD---KTLDGYQKKK 419
I+N AE+ I KEL N+ + +G KTLD Q+++
Sbjct: 93 IKNLIESNAELLHIMKELVNLDREEEGSVPLKTLDAIQQQR 133
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 646 NVLPTLVAKIWLKLLVLKYP 705
+++PT VA W+K+L +YP
Sbjct: 258 DLVPTSVAAAWVKILAKEYP 277
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 804 LQVLSQE---ICEISEGGKVQQIVSLHPWYHQRQEVWVF 697
LQ L ++ +CE S+G + ++ HP Y R V++F
Sbjct: 54 LQALKEKNYFVCEKSDGIRCLLYMTEHPRYENRPSVYLF 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,631
Number of Sequences: 5004
Number of extensions: 67679
Number of successful extensions: 199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -