Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J02
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...   334   6e-92
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...   100   3e-21
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    73   4e-13
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    48   1e-05
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    48   1e-05
AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score =  334 bits (820), Expect = 6e-92
 Identities = 155/192 (80%), Positives = 178/192 (92%)
 Frame = +3

Query: 252 MPAVRGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCK 431
           MPAV+GDGMRGLAVFISDIRNCKSKEAE+KRINKELANIRSKFKGDKTLDGYQKKKYVCK
Sbjct: 1   MPAVKGDGMRGLAVFISDIRNCKSKEAELKRINKELANIRSKFKGDKTLDGYQKKKYVCK 60

Query: 432 LLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQ 611
           LLFIFLLG+DIDFGHMEAVNLLSSNKY+EKQIGYLFISVL+   SDL+KLI+Q I+NDL 
Sbjct: 61  LLFIFLLGNDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLIEQQSDLMKLIVQGIRNDLT 120

Query: 612 SRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPE 791
           SRNP+HVNLALQCI+N+GS++M EAF T++PKLLVSG+T+D VKQSAALC+L+LFR SP+
Sbjct: 121 SRNPVHVNLALQCISNMGSREMVEAFCTDLPKLLVSGETIDFVKQSAALCILKLFRNSPD 180

Query: 792 IIPGGEWTSRII 827
               G++ SRI+
Sbjct: 181 SFQPGDYASRIV 192


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 58/177 (32%), Positives = 97/177 (54%)
 Frame = +3

Query: 267 GDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIF 446
           G  MR L   I  +R  ++   E   +++E ANIR  F+ D   D   K + + KLL+I 
Sbjct: 24  GTPMR-LRDLIRQVRAARTMAEERAVVDRESANIRESFRDD---DSPWKCRNIAKLLYIH 79

Query: 447 LLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRNPI 626
           +LG+   FG ME + L++  ++++K+IGYL   +L++  S++  L+  S+KNDL      
Sbjct: 80  MLGYPAHFGQMECMKLVAHPRFTDKRIGYLGAMLLLDERSEVHMLVTNSLKNDLTCSTQF 139

Query: 627 HVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPEII 797
              LAL  + +I S +M      E+ K++   +    +K+ AALC  R+ RK PE++
Sbjct: 140 VSGLALCTLGSICSAEMCRDLANEVEKIIKQNNA--YLKKKAALCAFRIVRKVPELM 194


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 45/173 (26%), Positives = 88/173 (50%)
 Frame = +3

Query: 279 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGH 458
           + L   I  IRN  +K+ E + I + +  I+ + + D     Y K   + KL ++ +LG+
Sbjct: 16  KSLTDLIRGIRN--NKDNESRYITQCMEEIKQELRQDSI---YVKANAIEKLAYLQMLGY 70

Query: 459 DIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHVNL 638
           DI +     + +++S KY+EK+IGYL  +   +  +D++ L    I+ D+ S N     +
Sbjct: 71  DISWASFNVIEVMASTKYTEKRIGYLAAAQSFHDETDVLMLTTNLIRKDVNSSNMYESGI 130

Query: 639 ALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAALCLLRLFRKSPEII 797
           AL  ++   + D+A     ++  LL    + +  ++ A L L ++F K P+ +
Sbjct: 131 ALGGLSCFVTPDLARDLAADVVNLL--SCSRNYTRKRAVLLLYKIFLKYPDAL 181


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 30/148 (20%), Positives = 72/148 (48%)
 Frame = +3

Query: 354 ELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGY 533
           E+  ++++   DK     +KK+ V K++    +G D+     + VN + ++    K++ Y
Sbjct: 14  EIFELKNELNSDKK---EKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNVELKKLVY 70

Query: 534 LFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLL 713
           L++     +  DL  + + +   D +  NP+   LA++ +  I  + + E     + + +
Sbjct: 71  LYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130

Query: 714 VSGDTMDVVKQSAALCLLRLFRKSPEII 797
              D    V+++AA+C+ +L   +P ++
Sbjct: 131 KDED--PYVRKTAAVCVAKLHDMNPALV 156


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 30/148 (20%), Positives = 72/148 (48%)
 Frame = +3

Query: 354 ELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGY 533
           E+  ++++   DK     +KK+ V K++    +G D+     + VN + ++    K++ Y
Sbjct: 14  EIFELKNELNSDKK---EKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNVELKKLVY 70

Query: 534 LFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLL 713
           L++     +  DL  + + +   D +  NP+   LA++ +  I  + + E     + + +
Sbjct: 71  LYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130

Query: 714 VSGDTMDVVKQSAALCLLRLFRKSPEII 797
              D    V+++AA+C+ +L   +P ++
Sbjct: 131 KDED--PYVRKTAAVCVAKLHDMNPALV 156


>AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical
           protein Y106G6H.1 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 755 CSRLFHYIHGITRDKKFGYFSTKSFSH 675
           C+     ++ IT D+ FGYFST + +H
Sbjct: 187 CNNQITDLNSITEDQLFGYFSTLATAH 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,624,401
Number of Sequences: 27780
Number of extensions: 372663
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)