Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_I24
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 32 0.53
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 31 1.6
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 29 4.9
04_03_0739 + 19180048-19182039 29 6.5
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 8.6
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373... 28 8.6
05_05_0149 - 22733703-22736216 28 8.6
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 683 LQDNEEPLGSSTASKETLEANKSNENXXPS 772
+QD E LG+ K+T +ANK+ EN PS
Sbjct: 435 IQDGSESLGADAYPKQTTKANKTIENIEPS 464
>04_04_0824 - 28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 393 IVYQFFISVCRFKRLSEVYIF--CYVMFSAIFSLQRSPCYFRCWRXEGPSYQVLIQFL-- 226
I++ F+S+ R R F C +F I + C+FR EG YQVL+ L
Sbjct: 960 IIFYRFLSLYRNLRGQHFAGFYPCMDIFLTIIVCDFNTCHFRDGVSEGQFYQVLLYELDA 1019
Query: 225 VPKRCRLVYLNYFP 184
+ K C + NY P
Sbjct: 1020 IRKACASLEPNYQP 1033
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 539 SDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCNGFLDSTFNDTLQDNE 697
+D T+P + K K++ E + +K P++ P NL T+ QD E
Sbjct: 454 ADMITTPPSKKAKNSESEEHGVSKVSMPNIDVPSNLIRSMFGQTYKYLPQDYE 506
>04_03_0739 + 19180048-19182039
Length = 663
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 250 TRTLXSPT--PEITRTPLQGKNGAKHNIT--KNIDLRKTFESTNGDEKLIHNNPILSAVI 417
T T +P P TR P+ + GA + + +R FE G IH S VI
Sbjct: 65 TATTATPVRAPVRTRAPMGQRKGADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVI 124
Query: 418 KNHLQSYD 441
+NHL ++
Sbjct: 125 RNHLLRHE 132
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 491 SKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCN 652
S ND+ ++ + L SD C SP S + + + K++ P P+ + N
Sbjct: 35 SSDNDIADEDDEYSLPSDPCPSPSPSPKRRKKVDDEEDDKDYIPPKEGPELIRN 88
>08_01_1037 -
10536547-10536585,10536814-10537102,10537202-10537327,
10537336-10538291,10538379-10538825,10538904-10539632
Length = 861
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +1
Query: 268 PTPEITRTPLQGKNGAKHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNH 426
PTP + P Q ++ +++ D + T D K IH P + K H
Sbjct: 497 PTPAPSAPPAQDRHAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKSRKAH 549
>05_05_0149 - 22733703-22736216
Length = 837
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 602 EAKEFSPDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNEN 760
E EF L P+ +GF++S+ + Q+ + + S A K+T ++ ++N
Sbjct: 407 ELAEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSDSIDGSKN 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,310
Number of Sequences: 37544
Number of extensions: 333960
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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