Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I24
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U61948-6|AAB03142.1|  497|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    29   4.4  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    29   4.4  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    29   4.4  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    29   4.4  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 357 KRLSEVYIFCYVMFSAIFS-LQRSPCYFRCWRXEGPSYQVLIQF 229
           KR S  YIF Y ++   FS +    CYF C   E   Y++ ++F
Sbjct: 128 KRFSCRYIFKYTLYILTFSSIWGLSCYFLCGPTENKDYELKLEF 171


>Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical
           protein K03H1.7 protein.
          Length = 88

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 443 PESPTQDFERTPIIISSKINDLTNDTEN 526
           P SP+QD ERTPI + +  ND    +E+
Sbjct: 31  PRSPSQDIERTPIQVKTVENDENGSSES 58


>U61948-6|AAB03142.1|  497|Caenorhabditis elegans Hypothetical
           protein C46A5.1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 425 IYNHMIPESPTQDFERTPIIISSKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYME 604
           + N  +PE+P +    TP+    K    TN  E + L  +S          DN  E  ME
Sbjct: 93  VKNVKLPETPQKPENDTPVKDGLKPPRTTNSVEKINLSKESFNLSNEKIASDNGTEEKME 152

Query: 605 AK 610
            K
Sbjct: 153 KK 154


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 590 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 751
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 299 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 354


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 590 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 751
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 328 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 383


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 590 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 751
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 315 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 370


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 590 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 751
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 323 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 378


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 681 VSLKVESKNPLHKFFGEIK 625
           +S+ + +K PLHKF GEIK
Sbjct: 210 ISVPIYAKKPLHKFGGEIK 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,183
Number of Sequences: 27780
Number of extensions: 347549
Number of successful extensions: 954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)