Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I23
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 512 PKXXXPXPXGGGXFXXXKKPPPPPPXXXKKKK 417
           P    P P   G     + PPPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 512 PKXXXPXPXGGGXFXXXKKPPPPPPXXXKKKK 417
           P    P P     F    +PPPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 439 GGGGGGFXXXXKXPPPXGXGXXFFGXXXXXPPKXXXXXXXGGG 567
           GGG GGF      PPP   G   FG               GGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 5.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 497 PXPXGGGXFXXXKKPPPPPP 438
           P P   G       PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 21.0 bits (42), Expect(2) = 5.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 593 PXXGGXXXPPPP 558
           P  GG   PPPP
Sbjct: 756 PIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,572
Number of Sequences: 5004
Number of extensions: 19632
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)