Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I21
         (949 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   1.4  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   4.4  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   7.7  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 486 GFXGAXPXPRSXTRXPRXSGCGXRXQXXQGGXXGYPXIRGXXXEK 620
           G+ G  P P      P   G G   Q    G  G+P ++G   E+
Sbjct: 483 GYPGQ-PGPEGLRGEPGQPGYGIPGQKGNAGMAGFPGLKGQKGER 526


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +3

Query: 771 PXGXP--PWXPPXXXXPVPPPXRXPXSLXXLFPLSGXGG 881
           P G P  P   P    P PPP   P S     PL G  G
Sbjct: 570 PAGFPNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAG 608


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 870 PKGGKGXXGXPXXGXGGEQG 811
           P G KG  G P  G  G QG
Sbjct: 336 PSGPKGDAGVPGYGRPGPQG 355


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,818
Number of Sequences: 2352
Number of extensions: 6220
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103776201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)