Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I21
         (949 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10871-1|CAA71821.1|  201|Homo sapiens twist protein.                  31   4.6  
X91662-1|CAA62850.1|  201|Homo sapiens TWIST protein protein.          31   4.6  
X99268-1|CAA67664.1|  206|Homo sapiens B-HLH DNA binding protein...    31   6.1  

>Y10871-1|CAA71821.1|  201|Homo sapiens twist protein.
          Length = 201

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
 Frame = -1

Query: 880 PPLPERGKRXXRDXGXRXGGGTGXXXXGGXXGG--XPXGXXKXXRGSPPXXXXXXXXXXX 707
           PP  +RG R  R      GGG G    GG  GG   P    +  RG              
Sbjct: 29  PPSGKRGGRKRRTSRRTAGGGAGPGGAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGG 88

Query: 706 XGGGAXXGXXSQ 671
            GG +  G   Q
Sbjct: 89  GGGSSSGGGSPQ 100


>X91662-1|CAA62850.1|  201|Homo sapiens TWIST protein protein.
          Length = 201

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
 Frame = -1

Query: 880 PPLPERGKRXXRDXGXRXGGGTGXXXXGGXXGG--XPXGXXKXXRGSPPXXXXXXXXXXX 707
           PP  +RG R  R      GGG G    GG  GG   P    +  RG              
Sbjct: 29  PPSGKRGGRKRRTSRRTAGGGAGPGGAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGG 88

Query: 706 XGGGAXXGXXSQ 671
            GG +  G   Q
Sbjct: 89  GGGSSSGGGSPQ 100


>X99268-1|CAA67664.1|  206|Homo sapiens B-HLH DNA binding protein
           protein.
          Length = 206

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 22/66 (33%), Positives = 24/66 (36%)
 Frame = -1

Query: 880 PPLPERGKRXXRDXGXRXGGGTGXXXXGGXXGGXPXGXXKXXRGSPPXXXXXXXXXXXXG 701
           PP  +RG R  R      GGG G    GG  GG   G  +   GSP             G
Sbjct: 29  PPSAKRGARKRRSSRRSAGGGAGP---GGAAGGAVGGGDEP--GSPAQGKRGKKSAGCGG 83

Query: 700 GGAXXG 683
           GG   G
Sbjct: 84  GGGAGG 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,003,574
Number of Sequences: 237096
Number of extensions: 1432280
Number of successful extensions: 6942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6077
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)