Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I21
         (949 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.91 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.91 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.91 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.1  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    24   5.4  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
 Frame = +1

Query: 601 GGXRXKXLVTKGPXX--GXXPVKGPXGXXFPXXXRPPDXXSXXSXXXXXXGNPXGXXXXP 774
           GG      +T GP    G  P+ G      P    PP               P      P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760

Query: 775 XXXPXGXXPXXPPLFPPXXXXRXPXPPFSP 864
              P G  P  PP  PP      P PP  P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
 Frame = +1

Query: 601 GGXRXKXLVTKGPXX--GXXPVKGPXGXXFPXXXRPPDXXSXXSXXXXXXGNPXGXXXXP 774
           GG      +T GP    G  P+ G      P    PP               P      P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760

Query: 775 XXXPXGXXPXXPPLFPPXXXXRXPXPPFSP 864
              P G  P  PP  PP      P PP  P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
 Frame = +1

Query: 601 GGXRXKXLVTKGPXX--GXXPVKGPXGXXFPXXXRPPDXXSXXSXXXXXXGNPXGXXXXP 774
           GG      +T GP    G  P+ G      P    PP               P      P
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343

Query: 775 XXXPXGXXPXXPPLFPPXXXXRXPXPPFSP 864
              P G  P  PP  PP      P PP  P
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +3

Query: 684 PXXAPPPXXXXXXXXXXXXGGEPRXXFXXPXGXPPWXPPXXXXPVPPPXRXP 839
           P   PPP             G+PR     P G PP  PP      PPP   P
Sbjct: 667 PVPHPPPMGFPFQHQLTQLPGQPR-----PAGLPPGVPPMFNLNAPPPPGIP 713


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 744 GEPRXXFXXPXGXPPWXPPXXXXPVPPPXRXPXS 845
           G PR  +  P G  P  PP    P PPP +   S
Sbjct: 805 GGPRPPYPYPGGPVPPGPPQNRMPPPPPAQGAPS 838


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 24.2 bits (50), Expect(2) = 5.4
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -1

Query: 556 RSPXPEXRGQRVXXRGXGXAPXKPTXXPRXXAXXXXQXKPPXPPPXP 416
           R   PE           G  P  P   PR          PP PPP P
Sbjct: 103 RGRRPEYEEYEDEEGNPGGVPAPPNP-PRTCCPPPTPAAPPPPPPPP 148



 Score = 23.0 bits (47), Expect(2) = 5.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 439 PPXPPPXPGXKXXSHXC 389
           PP PPP P  +  +  C
Sbjct: 143 PPPPPPPPAPEAPTQCC 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,268,257
Number of Sequences: 27780
Number of extensions: 173679
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)