Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I19
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    29   0.85 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   2.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   4.5  

>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 458 NYVAAAAPSELFLVSLMVGNKFLQD 532
           NY+       LFLV LM   KFLQD
Sbjct: 76  NYIPLLCGRRLFLVCLMAATKFLQD 100


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 88  TNIYDSREQNRDSNQNLKEFP 26
           +N+Y SRE N   +Q LK+FP
Sbjct: 180 SNLYTSREVNDSISQRLKKFP 200


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 151 NVEYIKKTTGRVKVQDQGHG*S*RVFEAHYKDPILRAAAFTSVPQP 288
           N+   K T G V VQ +       +F  HYKD ILR  A   + +P
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEP 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,646
Number of Sequences: 5004
Number of extensions: 51490
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)