Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_I18
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 30 0.50
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 29 0.87
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 2.0
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 27 3.5
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 4.7
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 4.7
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 8.1
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 26 8.1
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 8.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 8.1
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 544 IKSPGKTDSEDSLSNENNLKPINYLFK 624
I+ P KT S DS S EN+L +N LFK
Sbjct: 94 IQPPPKTPSSDSPSLENSLSNLNDLFK 120
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.87
Identities = 24/94 (25%), Positives = 45/94 (47%)
Frame = +1
Query: 511 DVSETLISSLTIKSPGKTDSEDSLSNENNLKPINYLFKMVRKRKTQMPIQNYNSELKENP 690
D+ + SSL ++ PG S+D + N+ L Y+F M+ ++ YN K++
Sbjct: 329 DIISRVESSLEMELPGFEGSDDWIRNQFEL----YIFGML------ATVKYYNFLKKQDD 378
Query: 691 EEITNFHKGTVDTDISNSTSSKTLEKKHTNAFKL 792
++ +H + IS+ + LE TN F++
Sbjct: 379 SILSQYHYLPSTSCISDYGETFLLEWMKTNTFRI 412
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +1
Query: 592 NNLKPINYLFKMVRKRKTQMPIQNYNSELKENPEEITNFHKGTVDTDISNSTSSKTLEKK 771
NN + Y + VR+R T P + N +++ ++ H+ + + EK
Sbjct: 119 NNKLRMTYTYHTVRRRDTPEPSKVGNRKIRVLLDQGNQMHRPVAPETKAEEAEHQENEKH 178
Query: 772 HTNAFKL 792
H + F+L
Sbjct: 179 HRHHFRL 185
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 574 DSLSNENNLKPINYLFKMVRKRKTQMPIQNYNSELKENPEEI 699
D+L EN L N FK+ + + + + ++N +L+ N EE+
Sbjct: 472 DNLEKENLLLVNNNAFKVDDRSVSSVALDDHNRQLQMNVEEL 513
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 664 YNSELKENPE-EITNFHKGTVDTDISNSTSSKTLEKKHT 777
YN P+ E+T + + T + D+S ST S+ L K++
Sbjct: 20 YNQSAHRIPQKEVTEWFRKTYNKDLSQSTISEILSPKYS 58
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 496 DQDVLDVSETLISSLTIKSPGKTDSEDSLSNENNLKPINYLFKMVRKRKTQMPIQNYNSE 675
++ V+D + I ++ + ++ S DSL L YL + K ++ + +NY +
Sbjct: 1093 EEFVIDDGSSSIIDISDELQDESSSRDSLKKGIELIEDYYLSQSTSKLESSVEGKNYLLK 1152
Query: 676 LKENPEEIT-NFHKGTVDTDISNSTSSKTLEK 768
+K + + H G D + + +T S +EK
Sbjct: 1153 VKFKDINVNWDLHDG-YDWEATRATISSAIEK 1183
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 147 LRRSCGYRIVIYNCAFHHYLQNFHLFHNG 233
L+++ GY +V F+ +L +F + H G
Sbjct: 507 LQQATGYTVVAEKLNFYRFLSHFRMVHRG 535
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 673 ELKENPEEITNFHKGTVDTDISNSTSSKTLEKKHTNAFKLLMDSR 807
EL + EE+ N HK + I S S L+ +H N LL+ +
Sbjct: 889 ELDSSLEEMRNRHKSLNEHFIMLSDSMANLQVEHENMSALLLKEK 933
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 517 SETLISSLTIKSPGKTDSEDSLSNENNLKPINYLFKMVRKRKTQMPIQNYNSELKENPEE 696
S+T + SP K+ D++S +++ + N K +T + ++ E +E
Sbjct: 380 SDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKSKFPPPSQTLVTTSTISAAGNEPSDE 439
Query: 697 ITNFHKGTVDTDISNSTSSKTLEKK 771
I + + D+D +S L+KK
Sbjct: 440 IGSENDSDSDSDSDSSVPLSQLQKK 464
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 270 RSKVCQSIKILRYHYGKGENFV 205
RS +C +K RYHY K FV
Sbjct: 336 RSAICDWLKFSRYHYLKFFTFV 357
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 574 DSLSNENNLKPINYLFKMVRKRKTQMPIQNYNSELKENPEEI 699
+ + N+ ++K IN+L ++VR + Q + K PE I
Sbjct: 236 EGMMNQTHVKAINHLQEVVRVSEAQTLAGEWTGYAKREPEFI 277
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 67 RYSINLGEYTNSINPFMY 120
RY+I G Y+N I P+ Y
Sbjct: 2113 RYTIPSGSYSNDIKPYFY 2130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,737
Number of Sequences: 5004
Number of extensions: 62739
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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