Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I15
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...   138   6e-33
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...   127   1e-29
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917...    31   0.95 
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...    29   3.8  

>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score =  138 bits (334), Expect = 6e-33
 Identities = 65/131 (49%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
 Frame = +1

Query: 238 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 417
           +E+PC  L++F     P    ++K DLE  D   K++A+K+ I ++L+GE +P L + ++
Sbjct: 1   MEKPCTLLVHFDKG-SPSMANEIKADLEGSDVAAKVDAMKRAIMLLLNGETLPHLFITVV 59

Query: 418 RFVLPLQDHMIKKLLLIFWEIVPKTS-PDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLR 594
           R+VLP +DH I+KLLL++ EIV K     GK+L EMIL+C   R +LQHPNE+IRG TLR
Sbjct: 60  RYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMILICQNLRNNLQHPNEYIRGVTLR 119

Query: 595 FLCKLKEPELL 627
           FLC+L EPELL
Sbjct: 120 FLCRLNEPELL 130


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score =  127 bits (307), Expect = 1e-29
 Identities = 58/130 (44%), Positives = 88/130 (67%)
 Frame = +1

Query: 238 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 417
           +E+P   L++F          ++K DLE  D   K++A+K+ + ++L+GE +P L + ++
Sbjct: 1   MEKPSTLLVHFDKG-SAAMAGEIKADLEGSDVAAKVDAMKRAVMLLLNGETLPTLFITVV 59

Query: 418 RFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRF 597
           R+VLP +DH I+KLLL++ EI+ K    G+ L EMIL+C   R +L HPNE+IRG TLRF
Sbjct: 60  RYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMILICQNLRNNLHHPNEYIRGVTLRF 119

Query: 598 LCKLKEPELL 627
           LC+L EPE+L
Sbjct: 120 LCRLSEPEVL 129


>01_05_0762 +
           24990915-24990970,24991076-24991592,24991676-24991753,
           24993678-24993743,24994819-24994943,24995414-24995612,
           24995909-24996137,24996259-24996425,24996526-24996735,
           24997245-24997355,24997436-24997612,24997826-24998284,
           24998676-24998966
          Length = 894

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 439 DHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEP 618
           D ++KK+  ++  +  +  PD  LL    L  D + +D   P   IRG  LR LC L+ P
Sbjct: 77  DVVLKKMCYLYVGVHARNHPDLALLTINFLQRDCHDQD---PT--IRGLALRSLCSLRVP 131

Query: 619 ---ELLXTPNASHTGLSRAQTFV 678
              E L +P A  TGL     +V
Sbjct: 132 NLVEYLVSPLA--TGLKDPSAYV 152


>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +1

Query: 328 DTKKKIEALKKTIGIILSGEKIPGLLMIIIRF-VLPLQDHMIKKLLLIFWEIVPKTSPDG 504
           D +K  + + K + ++  GE    +    + F V  L       L  + + ++ + SP  
Sbjct: 41  DARKCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSS 100

Query: 505 KLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEPELL 627
               E+I+V  +  KD+    +  R + +R LC++ +  LL
Sbjct: 101 ---DEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLL 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,611,771
Number of Sequences: 37544
Number of extensions: 392071
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)