Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I15
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...   188   4e-48
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    46   5e-05
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    46   5e-05
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    29   6.0  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      29   6.0  

>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score =  188 bits (459), Expect = 4e-48
 Identities = 91/134 (67%), Positives = 107/134 (79%), Gaps = 1/134 (0%)
 Frame = +1

Query: 229 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIP-GLL 405
           M+  EQPCYTLI+ P+D E  +E QLK   EKG  K++IEALKK I +IL+GEK    +L
Sbjct: 1   MSSGEQPCYTLIHVPSDAELPSEAQLKEKFEKGGDKERIEALKKLIYMILNGEKTSQSML 60

Query: 406 MIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGS 585
           M +IRF LP  +H +KK+LLIFWE VPKT  +GKLL EMILVCDAYRKDLQHPNEF+RGS
Sbjct: 61  MYVIRFCLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMILVCDAYRKDLQHPNEFVRGS 120

Query: 586 TLRFLCKLKEPELL 627
           TLRFLCKL+EPELL
Sbjct: 121 TLRFLCKLREPELL 134



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +2

Query: 638 MPAIRACLEHRHSYVRRNAXXCYXYLI*ELLXXXIPE 748
           MPAIRACLEHRHSYVRRNA  C  + I +     IP+
Sbjct: 138 MPAIRACLEHRHSYVRRNA-VCAIFTIYKNFEFLIPD 173


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 28/105 (26%), Positives = 53/105 (50%)
 Frame = +1

Query: 304 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 483
           LK  L+      K++A+K+ I +I  G+ +  L   +++ V   ++  +KKL+ ++    
Sbjct: 19  LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77

Query: 484 PKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEP 618
            +   D  LL         +++ L+ PN+ IRGS LR L  ++ P
Sbjct: 78  AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVP 117


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 28/105 (26%), Positives = 53/105 (50%)
 Frame = +1

Query: 304 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 483
           LK  L+      K++A+K+ I +I  G+ +  L   +++ V   ++  +KKL+ ++    
Sbjct: 19  LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77

Query: 484 PKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEP 618
            +   D  LL         +++ L+ PN+ IRGS LR L  ++ P
Sbjct: 78  AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVP 117


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
            protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +1

Query: 277  DLEPCNEMQLKLDLEKGDTKKKIEALKKTIGI---ILSGEK--IPGLLMIIIRFVLPLQ- 438
            D +   +++ KLDLEK   K  I  L++ +     +  GEK      L+   R ++ L+ 
Sbjct: 814  DKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQ 873

Query: 439  --DHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNE 570
              D M K++  +F+E   +       +Q+M    DA R +L+   E
Sbjct: 874  ERDTMSKRIAALFYENDKQAEHFNIAIQDMQTTQDALRDELKECKE 919


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +1

Query: 277  DLEPCNEMQLKLDLEKGDTKKKIEALKKTIGI---ILSGEK--IPGLLMIIIRFVLPLQ- 438
            D +   +++ KLDLEK   K  I  L++ +     +  GEK      L+   R ++ L+ 
Sbjct: 814  DKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQ 873

Query: 439  --DHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNE 570
              D M K++  +F+E   +       +Q+M    DA R +L+   E
Sbjct: 874  ERDTMSKRIAALFYENDKQAEHFNIAIQDMQTTQDALRDELKECKE 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,147
Number of Sequences: 27780
Number of extensions: 365004
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)