Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I12
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.29 
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    26   8.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   8.2  

>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  PRATRPAPTCGWGRVGPDATAETASSDVARP 180
           P + +P P+  W R+G DA A TA+S +  P
Sbjct: 8   PLSPKPVPSNTWKRIGIDAFAATAASAMISP 38


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 180 RPSDVAGRRLGRRIRAHATPATCWGWSRCTRVXLAQSRCAAR 55
           +PS +  + L +++++  TP     W +  R  L +S C +R
Sbjct: 57  KPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRRSNCLSR 98


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 635 EFLFWEQVKYQDLRDNKLAFLVKRLAFKT 721
           + + W + ++Q++++    FL+K + FKT
Sbjct: 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKT 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,546
Number of Sequences: 5004
Number of extensions: 53180
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)