Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I12
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical
           protein F21H12.1 protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 171 DVAGRRLGRRIRAHATPATCWGWSRCTRVXLAQS 70
           D   R + R   AH  P +C  WSR  R  L  S
Sbjct: 53  DFMTRNIARTFSAHCLPVSCLSWSRDGRKLLTSS 86


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 88  PRATRPAPTCGWGRVGPDATAETASSDVARPLDWPRY*RDSPRRLATRQTR 240
           P    PAP     R  PD     A  ++A+ L+ PR  R  PRR   R+TR
Sbjct: 82  PPTQSPAP-----RAAPDHGPVQAPRNLAQALNLPRRARGRPRRSDVRRTR 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,608
Number of Sequences: 27780
Number of extensions: 303713
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)