Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I10
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 611 MGLHYHHLYWPRYLSVVFPW 552
           +G H  H Y P  L VV  W
Sbjct: 213 LGYHLFHTYIPSALIVVMSW 232


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 320 ILKARHCCFSLNRSVHTVTYHLIKFPIAQTLTPF 219
           ++ A  C   +    HTV Y +I F +A  + PF
Sbjct: 139 VITAAICTSGIVGRTHTVGYIIIGFLLAGIVQPF 172


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 144 SLNKQYNKYRFTYITKSITLNSILIKWC*CLCNWE-FN*MICYGVD*SVE 290
           +L ++Y   +   +TK++ + +  I W  C+ + E +N  + +  D  +E
Sbjct: 85  TLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIE 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,819
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)