Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I09
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.2  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   9.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 623 PXGAPPPXXGPPFXGFSPXXXPPPGGP 703
           P G PPP   PP  GF P   PPP  P
Sbjct: 5   PPGNPPPPPPPP--GFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 614  PXXPXGAPPPXXGPPFXGFSPXXXPPP 694
            P  P   PPP   PP     P   PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 696 GGPXKXPXPP-XXGGGPPP 749
           GGP   P PP   G GPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
 Frame = +2

Query: 614 PXXPXGAPPPXXGPP-FXGFSPXXXPPP 694
           P    G PPP   PP   G  P   PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
 Frame = +2

Query: 503 PXPPXX---PGAGXGXXPGGGGXGVXP--XXXGFXXGXXFFXPXXPXGAPPPXXGPPFXG 667
           P PP     PGAG G  PG G  G        G   G  FF    P        G  F G
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGHAFAG 135


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 690 GGXXXGENPXKGGPXXGGGAPXGXXG 613
           GG   G    +GGP   GG P G  G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGG 249


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 146 FXSFXFXXFFFXLFFFFXFXFMMXF 72
           F    +  FFF  FF F F F   F
Sbjct: 63  FIKMRYLSFFFEFFFLFSFAFAFDF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,172
Number of Sequences: 5004
Number of extensions: 21356
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)