Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_I08
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 40 0.003
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 40 0.003
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 40 0.003
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.29
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.29
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.2
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.2
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 31 1.2
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 39.9 bits (89), Expect = 0.003
Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
PK PP PP + G P P P P P PP
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Query: 824 PWGKPXXXFSIXPPXXG--TPXXGXGLXPPP 910
P G P S+ PP G P G G PPP
Sbjct: 303 PRGSPPTG-SLPPPQAGGSPPPAGTGSPPPP 332
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/92 (27%), Positives = 28/92 (30%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
P PPP K PP + G P P P +P PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 824 PWGKPXXXFSIXPPXXGTPXXGXGLXPPPXGG 919
G P PP G+P G PPP G
Sbjct: 293 RAGSPPPP----PPPRGSPPTGS--LPPPQAG 318
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 39.9 bits (89), Expect = 0.003
Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
PK PP PP + G P P P P P PP
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Query: 824 PWGKPXXXFSIXPPXXG--TPXXGXGLXPPP 910
P G P S+ PP G P G G PPP
Sbjct: 324 PRGSPPTG-SLPPPQAGGSPPPAGTGSPPPP 353
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/92 (27%), Positives = 28/92 (30%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
P PPP K PP + G P P P +P PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 824 PWGKPXXXFSIXPPXXGTPXXGXGLXPPPXGG 919
G P PP G+P G PPP G
Sbjct: 314 RAGSPPPP----PPPRGSPPTGS--LPPPQAG 339
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 39.9 bits (89), Expect = 0.003
Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
PK PP PP + G P P P P P PP
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Query: 824 PWGKPXXXFSIXPPXXG--TPXXGXGLXPPP 910
P G P S+ PP G P G G PPP
Sbjct: 309 PRGSPPTG-SLPPPQAGGSPPPAGTGSPPPP 338
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/92 (27%), Positives = 28/92 (30%)
Frame = +2
Query: 644 PKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXPPXX 823
P PPP K PP + G P P P +P PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 824 PWGKPXXXFSIXPPXXGTPXXGXGLXPPPXGG 919
G P PP G+P G PPP G
Sbjct: 299 RAGSPPPP----PPPRGSPPTGS--LPPPQAG 324
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Frame = +2
Query: 641 FPKXXPPPDXLXKXXPPX--SKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXP 814
+P PPP + PP + G P P P P P P P
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Query: 815 PXXP-WGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P +G P PP G G G+ PPP
Sbjct: 320 PPPSRFGPPGMGGMPPPPPPGMRYPG-GMPPPP 351
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/101 (23%), Positives = 28/101 (27%)
Frame = +2
Query: 608 PKXVKRPXXXLFPKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNP 787
P+ P ++P PPP P P P P P P
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 788 XXXXXXPXPPXXPWGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P PP P P P P G G+ PPP
Sbjct: 345 GGMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Frame = +2
Query: 641 FPKXXPPPDXLXKXXPPX--SKGGKPXXDIXXXPXFSPXKXPLXXPXXPNPXXXXXXPXP 814
+P PPP + PP + G P P P P P P P
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Query: 815 PXXP-WGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P +G P PP G G G+ PPP
Sbjct: 330 PPPSRFGPPGMGGMPPPPPPGMRYPG-GMPPPP 361
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/101 (23%), Positives = 28/101 (27%)
Frame = +2
Query: 608 PKXVKRPXXXLFPKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNP 787
P+ P ++P PPP P P P P P P
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 788 XXXXXXPXPPXXPWGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P PP P P P P G G+ PPP
Sbjct: 355 GGMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Frame = +2
Query: 638 LFPKXXPPPDXLXKXXPPXS--KGGKPXXDIXXXPXF-SPXKXPLXXPXXPNPXXXXXXP 808
L P PPP PP S +G P + P + +P P P P P
Sbjct: 569 LAPARPPPP-------PPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFG 621
Query: 809 XPPXXPWGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P P PP G P G G PPP
Sbjct: 622 MAPISSAAPPPPP---PPPPMGLPAVGAGAPPPP 652
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Frame = +2
Query: 638 LFPKXXPPPDXLXKXXPPXS--KGGKPXXDIXXXPXF-SPXKXPLXXPXXPNPXXXXXXP 808
L P PPP PP S +G P + P + +P P P P P
Sbjct: 395 LAPARPPPP-------PPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFG 447
Query: 809 XPPXXPWGKPXXXFSIXPPXXGTPXXGXGLXPPP 910
P P PP G P G G PPP
Sbjct: 448 MAPISSAAPPPPP---PPPPMGLPAVGAGAPPPP 478
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = +2
Query: 608 PKXVKRPXXXLFPKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNP 787
PK +P PK P P+ K P KP + P P P P
Sbjct: 199 PKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTK 258
Query: 788 XXXXXXPXPPXXPWGKP 838
P P P KP
Sbjct: 259 LKSEPKPKPKLKPKPKP 275
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 608 PKXVKRPXXXLFPKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNP 787
PK +P PK P PD K P KP P P P P
Sbjct: 163 PKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPK 222
Query: 788 XXXXXXPXPPXXPWGKP 838
P P P KP
Sbjct: 223 PKPKPKPKPKPNPNPKP 239
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/77 (25%), Positives = 22/77 (28%)
Frame = +2
Query: 608 PKXVKRPXXXLFPKXXPPPDXLXKXXPPXSKGGKPXXDIXXXPXFSPXKXPLXXPXXPNP 787
PK +P PK P P+ K P KP P P P P
Sbjct: 155 PKLKSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPK 214
Query: 788 XXXXXXPXPPXXPWGKP 838
P P P KP
Sbjct: 215 PKPEPKPKPKPKPKPKP 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,325
Number of Sequences: 27780
Number of extensions: 148858
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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