Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I04
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   8.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   8.1  

>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 733 TCLLQLIMVTNKAIASQISQIKHFFH 656
           +CL+ L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 424 IHLFYFYVKIQFFVGLMSSLSLWTFEFSHKY 332
           I + +FY++  F  G+ SS+  W +  S  Y
Sbjct: 306 IDIVHFYLETPFLAGIFSSIFFWVWCHSLLY 336


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 227 IIATILVIKITC-LDKRMFVKHNVVEVGFFYKLK-TWI 334
           I  T L I ++C L+KR+ +    + + FF KLK  W+
Sbjct: 241 IETTNLDIVVSCFLEKRVLIPSRTMPISFFPKLKNVWL 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,412
Number of Sequences: 5004
Number of extensions: 48188
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)