Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_I03
(1049 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.089
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.36
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.47
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.3
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 27 5.8
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 27 5.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.7
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/85 (34%), Positives = 29/85 (34%)
Frame = -1
Query: 848 GXXGGXGPGPRGAXXRXGGXQGXXGXXGXXXXGXXGGXRAGAXGGGXAPXGXPXGGXGGP 669
G GG G G G GG G G G G G G GG G P G GGP
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGE---GHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Query: 668 RXKXXGXAPXXXGGRXXAXAGGXGG 594
G GG GG GG
Sbjct: 245 --GGFGGGLGGFGGGPGGFGGGPGG 267
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/60 (40%), Positives = 25/60 (41%)
Frame = -1
Query: 848 GXXGGXGPGPRGAXXRXGGXQGXXGXXGXXXXGXXGGXRAGAXGGGXAPXGXPXGGXGGP 669
G GG G GP GG +G G G G GG G GGG G GG GGP
Sbjct: 221 GGHGGFGGGP-------GGFEGGPGGFGGGPGGFGGGL--GGFGGGPGGFGGGPGGHGGP 271
Score = 33.9 bits (74), Expect = 0.038
Identities = 25/68 (36%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Frame = -1
Query: 866 PXXAPXGXXGGXGPGPRGAXXRXGGXQGXXGXXGXXXXGXXG-GXRAGAXGGGXAPXGX- 693
P P G G G G G GG G G G G G G G GGG G
Sbjct: 200 PPPGPGGFGGFGGFGGEG--HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 692 PXGGXGGP 669
P G GGP
Sbjct: 258 PGGFGGGP 265
Score = 29.1 bits (62), Expect = 1.1
Identities = 29/96 (30%), Positives = 29/96 (30%)
Frame = -1
Query: 752 GXXGGXRAGAXGGGXAPXGXPXGGXGGPRXKXXGXAPXXXGGRXXAXAGGXGGXXPXRXP 573
G GG G GG P P GG GG G GG GG GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGP-GGFGG--FGGFGGEGHHHGGH-GGFGGGPGGFEGGPGG 239
Query: 572 TXXGAXRXPRXXGGXXXXPPPGXXXGXGPRGRXXPG 465
G GG P G GP G PG
Sbjct: 240 FGGGPGGFGGGLGGFGGGP---GGFGGGPGGHGGPG 272
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.089
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = -1
Query: 827 PGPRGAXXRXGGXQGXXGXXGXXXXGXXGGXRAGAXGGGXAPXGXPXGGXGGPRXKXXGX 648
PG RG G +G G GG R G GG G G GG G
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 647 APXXXGGR 624
G +
Sbjct: 65 GGAKGGAK 72
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.36
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = +1
Query: 481 PRGPXPXXXPGGGXXXXPPXXRGXRXAPXXVGXRXGXXPPXPPAXAXXLPPXXXGAXPXX 660
P P P PG PP R + V P PP+ LPP + P
Sbjct: 388 PPAPPPAI-PGRSAPALPPLGNASRTSTPPVPT----PPSLPPSAPPSLPPSAPPSLPMG 442
Query: 661 XXRGPPXPP 687
PP PP
Sbjct: 443 APAAPPLPP 451
Score = 28.7 bits (61), Expect = 1.4
Identities = 41/181 (22%), Positives = 47/181 (25%), Gaps = 10/181 (5%)
Frame = +1
Query: 532 PPXXRGXRXAPXXVGXRXGXXPPXPP------AXAXXLPPXXXGAXPXXXXRGPPXPPXG 693
PP R P G PP PP A + LPP A PP PP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-------PPPPPRS 368
Query: 694 XXXXXXXXXXXXXXXXXXFPXXXXPXXP--XXPXXPPXRXXAPRG--PGPXPPXXPXGAX 861
P P P P PP + P P PP P A
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 862 XGXFXLXXXRXXAXXPXAPXPVAXXXPXXXVXXGSLXXSPXXXXRSXXPXXPPVXXXXPX 1041
P AP P+ P + +P + P PP P
Sbjct: 429 PSLPPSAPPSLPMGAPAAP-PLPPSAPIAPPLPAGMPAAPPLPPAA--PAPPPAPAPAPA 485
Query: 1042 A 1044
A
Sbjct: 486 A 486
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 668 GGPXPPPXAXPXGXXPPXGPPXXXPP 745
G P PPP P G PP PP PP
Sbjct: 7 GNPPPPPP--PPGFEPPSQPPPPPPP 30
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -1
Query: 743 GGXRAGAXGG--GXAPXGXPXGGXGGP 669
GG GA GG G AP G P G GP
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGP 638
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.5
Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Frame = +1
Query: 427 SXAXXXXRVSXXLPGXXLPRGPXPXXXPGGGXXXXPPXXRGXRXAPXXVGXRXGXXPPXP 606
S A + S P P G P P P G P G P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA---GVPPVPP 1193
Query: 607 PAXAXXLPPXXXGAXP-XXXXRGPPXP 684
P+ A +P G P PP P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 680 PPPXAXPXGXXPPXGPPXXXPPXS 751
PPP A P PP PP P S
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASS 1739
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 345 RHKREAXGAKRDTTAQAKGERPQPRGGARS 256
+H+R GA D + + +RP+ R AR+
Sbjct: 77 KHQRGIVGANLDVIKEKRNQRPEVRAAARA 106
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 345 RHKREAXGAKRDTTAQAKGERPQPRGGARS 256
+H+R GA D + + +RP+ R AR+
Sbjct: 77 KHQRGIVGANLDVIKEKRNQRPEVRAAARA 106
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 674 PXPPPXAXPXGXXPPXGPPXXXPP 745
P PPP A P P P PP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPP 1906
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 668 GGPXPPPXAXPXGXXPPXGPPXXXPP 745
G P PPP G PP PP PP
Sbjct: 760 GPPPPPPPPGVAGAGPP--PPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,616
Number of Sequences: 5004
Number of extensions: 16395
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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