Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_I02
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.93 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/68 (27%), Positives = 22/68 (32%)
 Frame = +1

Query: 724  PXXXPXXPPPXRXXXXXGXXXGXAPPPEXXXXXXXPPXXXPXPXXXFPPXXRXXXXTPPL 903
            P   P  P P           G  P P+       PP   P P    PP  +     PP+
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA--PPV--PAPSSGIPPVPKPAAGVPPV 1191

Query: 904  PPXXGAXP 927
            PP   A P
Sbjct: 1192 PPPSEAPP 1199



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/68 (27%), Positives = 21/68 (30%)
 Frame = +1

Query: 724  PXXXPXXPPPXRXXXXXGXXXGXAPPPEXXXXXXXPPXXXPXPXXXFPPXXRXXXXTPPL 903
            P   P  P P           G  P P        PP   P P    PP  +     PP+
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI---PPV--PKPSVAAPPVPKPSVAVPPV 1114

Query: 904  PPXXGAXP 927
            P   GA P
Sbjct: 1115 PAPSGAPP 1122



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/71 (25%), Positives = 21/71 (29%)
 Frame = +1

Query: 715  PAFPXXXPXXPPPXRXXXXXGXXXGXAPPPEXXXXXXXPPXXXPXPXXXFPPXXRXXXXT 894
            P+ P      P P             A PP        PP   P      PP  +     
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA---PPVPKPSVAA 1130

Query: 895  PPLPPXXGAXP 927
            PP+P   GA P
Sbjct: 1131 PPVPVPSGAPP 1141


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/65 (29%), Positives = 21/65 (32%)
 Frame = +3

Query: 714 PGVSPXXPXXAPPXKXXXXXGXPXRXGPPPGXXXXSPXSPXXXPPXXLXFPXXXSXXXXN 893
           P + P  P  APP         P    PPP      P +P   PP     P         
Sbjct: 147 PSIPPPSPASAPPIPSKAPP-IPSSL-PPPA----QPAAPVKSPPSAPSLPSAVPPMPPK 200

Query: 894 XPPPP 908
            PPPP
Sbjct: 201 VPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/64 (28%), Positives = 18/64 (28%)
 Frame = +1

Query: 736 PXXPPPXRXXXXXGXXXGXAPPPEXXXXXXXPPXXXPXPXXXFPPXXRXXXXTPPLPPXX 915
           P   PP             APP         PP     P    PP        PPLPP  
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA--PPLPAGMPAAPPLPPAA 473

Query: 916 GAXP 927
            A P
Sbjct: 474 PAPP 477


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 711 IPGVSPXXPXXAPPXKXXXXXGXPXRXGPPPGXXXXSPXSPXXXPP 848
           +P  +P  P   PP       G P    PPPG     P  P   PP
Sbjct: 741 VPTPAPA-PIPVPPPAPIM--GGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,009
Number of Sequences: 5004
Number of extensions: 19750
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)