Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H23
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   1.5  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   2.0  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   2.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   4.6  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   6.1  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -1

Query: 489 KISSKSVEVMIF---SKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRTNGKKSFIIRVP 319
           KI+SK   V +    ++ S LLSG  + + F  F KYI  +N   +    G  S+  R+ 
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG-YSYGARIS 112

Query: 318 IKFKIWILVERPLT 277
           +   I + +++ ++
Sbjct: 113 MHKSITLAIDKRIS 126


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 337 TFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFEST 498
           ++  I  + +  + PK+I  K++K +K +   E L +  K   FD+   + E T
Sbjct: 601 SYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 422 THPESSLLSLEKIITSTDLEEILKVLSPXPVSPQKPN 532
           T    SL+ LEKII    L+  LK   P P  P+  N
Sbjct: 158 TEKPHSLVPLEKIIAQVKLDPSLKNSLPHPYEPEIQN 194


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 385 NIFTKVVKINKINSPREQLAEFRKDHY---FDRFRGDFESTFSVXG 513
           N F K   + +I S    ++EF+K  Y   FD F+  F+    + G
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESGMRG 208


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 509 PVS-PQKPNQAETTVEKPLSSWPLPG 583
           PVS P KPN   T  EKPL S  LPG
Sbjct: 355 PVSKPSKPNTL-TEDEKPLQSTKLPG 379


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 431 ESSLLSLEKIITSTDLEEILKVLSPXPVSPQKPN-QAETTV 550
           ES+L +L+K ++S  LEE  KVL    +   + N Q E+T+
Sbjct: 291 ESNLSALKKSLSSEQLEEAKKVLDKHQIFGLRYNKQLESTL 331


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +1

Query: 316 YWDPDNKTF-------LPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDR 474
           YW PDNK         L I  ++  T     + T + +++K N P + +  F    +FD+
Sbjct: 544 YW-PDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDK 602

Query: 475 FRGDFES 495
              D ES
Sbjct: 603 THPDIES 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,509
Number of Sequences: 5004
Number of extensions: 56773
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)