Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H23
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 36  SLRFVVFVXVIMCEDLKDCVSNIESTFDRTFIVLSLITTAV-GVKIIVKLFRFYSLKYSR 212
           +L+ +VF+ + M  +L++ + N+     +   +L LI TA+  + ++  LF F       
Sbjct: 40  TLQLIVFIVIFMHPELRNML-NLNPNLKQNQDILLLILTAMSSIWLLTVLFSFVGFMKKI 98

Query: 213 TYETIPL 233
           TY  +PL
Sbjct: 99  TYSHLPL 105


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 209 GILQGIETK*FNNYLHANGSGNKRKNDE 126
           GI+ GI+TK     LH NGSGN+++ +E
Sbjct: 45  GIIAGIDTKPHLTGLH-NGSGNRKRVEE 71


>Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical
           protein R05H10.1 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 157 TAVVIRERTMKVLSNVDSMLD-TQSFKSSHIIXXXXXTNLKEFPYS 23
           T ++ R  +   L NVD ++  T SF +  ++       LKEFPYS
Sbjct: 151 TKMLSRNMSAARLHNVDGIVSATSSFANQTLLAKNGFQCLKEFPYS 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,088
Number of Sequences: 27780
Number of extensions: 312011
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)