Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.67 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 304 PPPPXXFFFXGGPXPPPXGGXXXGGXPPP 218
           P PP      G P PPP  G    G PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 272 GPPPPPXGGGXXGGXPPPAXXXXXXXKXGG 183
           GPPPPP   G  G  PPP          GG
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 301 PPPXXFFFXGGPXPPPXGGXXXGGXPPP 218
           PPP        P PPP G    G  PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +3

Query: 516 PPPPPPXKKXXPXGXGGGGGGXPPXXGGXXLPPKGGXTXXKKFXXXXPXXXPPP 677
           PPPPPP     P G  G G   PP       PP        ++    P   P P
Sbjct: 761 PPPPPP-----PPGVAGAGPPPPPP------PPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 222 GGXPPXXXPPXGGGXGPP 275
           GG PP   PP   G GPP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = -2

Query: 891 PPXPXGGXXXXFFFXPXXXXXGGXGGFXGGGXXXFFXXPGG 769
           PP   GG      F       GG GGF GGG   F   PGG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGF-GGGPGGFEGGPGG 239



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 555 GXGGGGGGXPPXXGG 599
           G GGG GG PP  GG
Sbjct: 192 GFGGGSGGPPPGPGG 206


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
 Frame = +3

Query: 516 PPPPPPXKK---XXPXGXGGGGGGXPP--------XXGGXXLPPKG 620
           PPPPPP ++     P G G      PP          G   LPP+G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 269 PPPPPXGGGXXGGXPPP 219
           PPPPP      G  PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 761 GGPPPGXIKKXXXPPPKXPPXPP 829
           G PPP        PP + PP PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.154    0.553 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,849
Number of Sequences: 5004
Number of extensions: 24712
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)