Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H21
(1061 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 42 2e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.051
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.090
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.63
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 2.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 41.5 bits (93), Expect = 2e-04
Identities = 33/135 (24%), Positives = 38/135 (28%), Gaps = 8/135 (5%)
Frame = +2
Query: 578 PSXXPPKXGGXXXXPXAPPTPXXPKNRRXGRPCXXEXPPPP-----PXLXKXXXXXXXXX 742
P+ PP P APP P + P PP P P + K
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 743 XXXXXXTXXXXPXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPP---PSXXXXGXXPX 913
P PP P AP P P P PP PS P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS 1165
Query: 914 TPSPPXXXPXNXXPP 958
+PP P + PP
Sbjct: 1166 VAAPPVPAPSSGIPP 1180
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = +3
Query: 840 AXPPXAPPXKXYPPXPXXXXXXXPXXPP---PXXXXPETXXPPXXRCSTQXPXPQPXGRX 1010
A PP P PP P P PP P P PP ST P P P
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA-- 1224
Query: 1011 STPXXPTPXXXXP 1049
P P P P
Sbjct: 1225 GLPPVPVPTAKAP 1237
Score = 34.7 bits (76), Expect = 0.022
Identities = 28/112 (25%), Positives = 33/112 (29%), Gaps = 1/112 (0%)
Frame = +2
Query: 626 APPTPXXPKNRRXGRPCXXEXPP-PPPXLXKXXXXXXXXXXXXXXXTXXXXPXXXPPXXP 802
APP P P P PP P P + + P P
Sbjct: 1120 APPVPK-PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 803 PPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PP P P P P P +P PS P + +PP P PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPP--VPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 32.3 bits (70), Expect = 0.12
Identities = 30/127 (23%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
Frame = +2
Query: 578 PSXXPPKXGGXXXXPXAP-PTPXXPKNRRXGRPCXXEXPPPPPXLXKXXXXXXXXXXXXX 754
PS PP P P P+ P + P P + K
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 755 XXTXXXXPXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXX 934
P P PPP AP P P PP PP G P P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG-LPPVPVPTAK 1235
Query: 935 XPXNXXP 955
P P
Sbjct: 1236 APPVPAP 1242
Score = 32.3 bits (70), Expect = 0.12
Identities = 26/111 (23%), Positives = 29/111 (26%)
Frame = +2
Query: 626 APPTPXXPKNRRXGRPCXXEXPPPPPXLXKXXXXXXXXXXXXXXXTXXXXPXXXPPXXPP 805
APP P +P P P P + P P P
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 806 PXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
P P P G P +PPPS P PP P PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPP--VPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 31.5 bits (68), Expect = 0.21
Identities = 28/115 (24%), Positives = 30/115 (26%), Gaps = 5/115 (4%)
Frame = +2
Query: 626 APPTPXXPKNRRXGRPCXXEXPP-PPPXLXKXXXXXXXXXXXXXXXTXXXXPXXXPPXXP 802
APP P P P PP P P + P PP
Sbjct: 1139 APPVPK-PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197
Query: 803 PPXGAPRGXXPXXPXPXGPPXQXLP----PPSXXXXGXXPXTPSPPXXXPXNXXP 955
PP P P P P P P PP P P+P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 26.6 bits (56), Expect = 5.9
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Frame = +3
Query: 846 PPXAPPXKXYPPXPXXXXXXXPXXPP-----PXXXXPETXXPPXXRCSTQXPXPQPXGRX 1010
PP AP K P P P P P PP ST P P P
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP---T 1047
Query: 1011 STPXXPTPXXXXP 1049
STP P P
Sbjct: 1048 STPPVPKSSSGAP 1060
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = +2
Query: 803 PPXGAPRGXXPXXPXPXGPPXQXLP---PPSXXXXGXXPXTPSPPXXXPXNXXP 955
PP P P P P P +P PP P P PP P + P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP-PPVPAPSSEIP 1074
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +3
Query: 849 PXAPPXKXYPPXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGRXSTPXXP 1028
P P PP P P PPP P + P S P P P G P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGA-PSAPPPVPA-PSSEIPSIPAPSGAPPVPAPSG---IPPVP 1095
Query: 1029 TPXXXXP 1049
P P
Sbjct: 1096 KPSVAAP 1102
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.051
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Frame = +2
Query: 788 PPXXPP------PXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPP 928
PP PP P AP P P GPP PPP G P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-PPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.12
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Frame = +2
Query: 776 PXXXPPXXPPPXGAPRGXXPXXPXPX----GPPXQXLPPPSXXXXGXXPXTPSP 925
P P PPP G P P P GPP PPP+ G P+P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +1
Query: 907 PRHXLPPXXTAXKPXPPPXX---GAAXNXXPPSXXDAXPXPXTPPXXXV 1044
P +P A P PPP G PP A P P PP V
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.090
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -3
Query: 957 GGXXFXGXXXGGEGVXGXXPXXXXXGGGRXWXGGPXGXGXXGXXPRGAPXG-GGXXGG 787
GG G GG G G P G G + GGP G G G P G GG GG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPG-GFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.12
Identities = 31/128 (24%), Positives = 35/128 (27%), Gaps = 1/128 (0%)
Frame = +2
Query: 578 PSXXPPKXGGXXXXPXAPPTPXXPKNRRXGRPCXXEXPPPPPXLXKXXXXXXXXXXXXXX 757
P PP G P +PP P P + + P PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPS-------------SRVS 300
Query: 758 XTXXXXPXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXT-PSPPXX 934
PP PPP RG P G LPPP + P PP
Sbjct: 301 AAALAANKKRPPPPPPPSRRNRGKPPIG---NGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Query: 935 XPXNXXPP 958
PP
Sbjct: 358 RSAPPPPP 365
Score = 30.7 bits (66), Expect = 0.36
Identities = 32/140 (22%), Positives = 37/140 (26%), Gaps = 12/140 (8%)
Frame = +2
Query: 575 RPSXXPPKXGGXXXXPXAPPTPXXPKNRRXGR----PCXXEXPPPPPXLX------KXXX 724
R + P G PP P P++ G P PPPPP +
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Query: 725 XXXXXXXXXXXXTXXXXPXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLP--PPSXXXX 898
P P PP A R P P P P P PPS
Sbjct: 379 LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438
Query: 899 GXXPXTPSPPXXXPXNXXPP 958
+PP PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPP 458
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = +2
Query: 776 PXXXPPXXPP--PXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXP 940
P PP PP P GAP P PP P + P P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +1
Query: 919 LPPXXTAXKPXPPPXXGAAXNXXPP--SXXDAXPXPXTPP 1032
LPP + P PPP + PP S A P PP
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 26.6 bits (56), Expect = 5.9
Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Frame = +2
Query: 626 APPTPXXPKNRRXGRPCXXEXPPPPPXLXKXXXXXXXXXXXXXXXTXXXX-PXXXPPXXP 802
AP T P R PPP + T P PP P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 803 P--PXGAPRGXXPXXPX-PXGPPXQXLPPP-SXXXXGXXPXTPSPPXXXPXNXXPP 958
P P AP P P PP + PP P P+ P P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.6 bits (56), Expect = 5.9
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +3
Query: 846 PPXAPPXKXYPPXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGRXSTPXX 1025
PP APP P P P PP P PP P P P + P
Sbjct: 424 PPSAPPSLP-PSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAP-PLPPAAPAPPPA 479
Query: 1026 PTPXXXXP 1049
P P P
Sbjct: 480 PAPAPAAP 487
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/56 (26%), Positives = 17/56 (30%)
Frame = +3
Query: 840 AXPPXAPPXKXYPPXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGR 1007
A PP P PP P P P P P ++ PQ GR
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGR 500
Score = 26.2 bits (55), Expect = 7.8
Identities = 22/99 (22%), Positives = 23/99 (23%)
Frame = +2
Query: 590 PPKXGGXXXXPXAPPTPXXPKNRRXGRPCXXEXPPPPPXLXKXXXXXXXXXXXXXXXTXX 769
PP AP P R P P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 770 XXPXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPS 886
P P P P G P P P PP P P+
Sbjct: 448 PLPPSAPIAPPLPAGMPAAP-PLPPAAPAPPPAPAPAPA 485
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.63
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = +2
Query: 776 PXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXP 955
P PP P P+ P P P P PPPS P + +PP P + P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPP---PMSVPPPPSAPPMPAGPPS-APPPPLPASSAP 1741
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +3
Query: 855 APPXKXYP-PXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGR 1007
APP P P P P PP P + PP S+ P P R
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/65 (26%), Positives = 18/65 (27%)
Frame = +3
Query: 840 AXPPXAPPXKXYPPXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGRXSTP 1019
A P PP + P P PPP P P P P S P
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTP--PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Query: 1020 XXPTP 1034
P P
Sbjct: 1742 SVPNP 1746
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 776 PXXXPPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSP 925
P P PPP AP P P GPP PP P P+P
Sbjct: 1707 PPPPPMSVPPPPSAP-------PMPAGPPS---APPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.84
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +2
Query: 788 PPXXPPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PP P P P P PP +PPPS P PS P + PP
Sbjct: 124 PPSAPAP---PTPQSELRPPTSAPPRPSIPPPS---PASAPPIPSKAPPIPSSLPPP 174
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 788 PPXXPPPXGAPRGXXPXXPXPXGPP 862
PP PPP P G P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 776 PXXXPPXXPPPXGAPRGXXPXXPXPXG 856
P PP PPP G P P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/58 (24%), Positives = 16/58 (27%)
Frame = +3
Query: 876 PPXPXXXXXXXPXXPPPXXXXPETXXPPXXRCSTQXPXPQPXGRXSTPXXPTPXXXXP 1049
PP P P PPP P S+ P P P + P P
Sbjct: 48 PPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +2
Query: 833 PXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
P P P PP P P G P P P PP
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPP 140
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.5
Identities = 25/96 (26%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Frame = +2
Query: 689 PPPPPXLXKXXXXXXXXXXXXXXXTXXXXPXXXPPXXPPPXGAPRGXXPXXPXPXGPP-- 862
PPPPP + P PP P P P P P PP
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEI-PPTYTPKQADPLPAPPPPPPPTLPPQS 250
Query: 863 --XQXLPPPS--XXXXGXXPXTPSPPXXXPXNXXPP 958
LP PS G P PP PP
Sbjct: 251 TNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 800 PPPXGAPRGXXPXXPXPXGPPXQXLPPPSXXXXGXXPXTPSPPXXXPXNXXPP 958
PPP G P P + +PPP P P P PP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.140 0.486
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,016
Number of Sequences: 5004
Number of extensions: 21763
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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