Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H20
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             30   2.9  
11_06_0610 - 25449085-25453284                                         29   3.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.0  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   8.8  
01_01_0083 + 631196-631675                                             28   8.8  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 456 PXGGGGGXXXXXKKXPPPPXGXGXFXXXPXPXPPKXXXP 572
           P  GG G        PPPP   G     P P PP    P
Sbjct: 80  PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPP 118


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 26/117 (22%), Positives = 34/117 (29%), Gaps = 2/117 (1%)
 Frame = +3

Query: 501  PPPPXGXGXFXXXPXPXPPKXXXPXXGXXGGNXFTPXX--GXXXFXPKNXGXXXKKNFSX 674
            PPPP   G     P   PP    P       +   P    G     PK+     K   S 
Sbjct: 694  PPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEK---SP 750

Query: 675  GVPPXKXXXKGGXXXXXXNPPPXKXXKKKTPXKGXGXTPPXXKKKTXXXXPPXKPPP 845
             +PP              +PP     ++K+P        P  +       P  K PP
Sbjct: 751  PIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPP 807


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 26/89 (29%), Positives = 27/89 (30%)
 Frame = +3

Query: 501 PPPPXGXGXFXXXPXPXPPKXXXPXXGXXGGNXFTPXXGXXXFXPKNXGXXXKKNFSXGV 680
           PPPP         P P PPK   P     G     P  G     P        K  S   
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP-------PKGPSPPP 366

Query: 681 PPXKXXXKGGXXXXXXNPPPXKXXKKKTP 767
           PP     KGG       PPP K    + P
Sbjct: 367 PPPPGGKKGGPP-----PPPPKGGASRPP 390


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 504 PPPXGXGXFXXXPXPXPPKXXXPXXGXXGGNXFT 605
           PPP G G     P P PP    P  G  GG   T
Sbjct: 5   PPPPGTGA----PPPPPPAAVGPPGGVGGGKPLT 34


>01_01_0083 + 631196-631675
          Length = 159

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 426 GXXXXXFFXXPXGGGGGXXXXXKKXPPPP 512
           G     ++  P GGGGG        PPPP
Sbjct: 84  GGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,037,727
Number of Sequences: 37544
Number of extensions: 524216
Number of successful extensions: 3914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)