Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H17
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   126   3e-30
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    30   0.41 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    27   3.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.7  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  126 bits (305), Expect = 3e-30
 Identities = 63/146 (43%), Positives = 86/146 (58%)
 Frame = +2

Query: 167 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLXKY 346
           FI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L  +
Sbjct: 7   FIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGF 66

Query: 347 MSSGPVVPMVWEGLNVCEDWPSYASAXLTQLTXXPALSAVISXFXLGRNIIHGSDSVESA 526
           M+SGPV  M+WEG    +       A    L   P          LGRN+ HGSDS+ESA
Sbjct: 67  MASGPVCAMIWEGKQAVKTGRLMLGAS-NPLDSAPGTIRGDYGIDLGRNVCHGSDSIESA 125

Query: 527 XKXIGLWFTDTEVVGWTPAXENXVYE 604
            + I LWF  +E+  +    E  +YE
Sbjct: 126 NREIKLWFQPSEIQVYDRTIEPWIYE 151


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 258  KPTSLKPFFSKRSIMVPT-RPRCTPSGLTIINSTH 157
            K T LK F  +RS+ V T   R   SGLT+ N+TH
Sbjct: 1239 KNTCLKRFKEERSLQVLTLHARSQSSGLTLTNATH 1273


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 363 WSLWYGRALMYVKTGRH 413
           ++ WYG  ++Y+KTGR+
Sbjct: 499 YNAWYGLGMVYLKTGRN 515


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 243 KPFFSKRSIMVPTRPRCTPSGLT 175
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,035
Number of Sequences: 5004
Number of extensions: 39314
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)