Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H17
(939 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 144 1e-34
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 138 6e-33
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 136 3e-32
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 134 1e-31
11_06_0289 - 21969248-21973516 33 0.33
11_06_0185 + 21018045-21022307 33 0.33
11_06_0284 + 21909758-21913645 29 7.1
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 144 bits (348), Expect = 1e-34
Identities = 71/145 (48%), Positives = 91/145 (62%)
Frame = +2
Query: 167 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLXKY 346
FI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPFF GL +
Sbjct: 49 FIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLCDF 108
Query: 347 MSSGPVVPMVWEGLNVCEDWPSYASAXLTQLTXXPALSAVISXFXLGRNIIHGSDSVESA 526
+SSGPV+ MVWEG V + A Q + + ++ +GRNIIHGSD E+A
Sbjct: 109 LSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLA-VVVGRNIIHGSDGPETA 167
Query: 527 XKXIGLWFTDTEVVGWTPAXENXVY 601
IGLWF E+V +T E +Y
Sbjct: 168 KAEIGLWFEPRELVSYTSNEEKWIY 192
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 138 bits (334), Expect = 6e-33
Identities = 70/146 (47%), Positives = 87/146 (59%)
Frame = +2
Query: 167 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLXKY 346
FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL +Y
Sbjct: 5 FIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEY 64
Query: 347 MSSGPVVPMVWEGLNVCEDWPSYASAXLTQLTXXPALSAVISXFXLGRNIIHGSDSVESA 526
+ SGPVV MVWEG +V A P +GRN+IHGSDSV++
Sbjct: 65 IISGPVVAMVWEGKDVVATGRRIIGA-TRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNG 123
Query: 527 XKXIGLWFTDTEVVGWTPAXENXVYE 604
K I LWF + + W +YE
Sbjct: 124 KKEIALWFPE-GLAEWRSNLHPWIYE 148
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 136 bits (328), Expect = 3e-32
Identities = 68/146 (46%), Positives = 87/146 (59%)
Frame = +2
Query: 167 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLXKY 346
FIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL +Y
Sbjct: 7 FIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLVEY 66
Query: 347 MSSGPVVPMVWEGLNVCEDWPSYASAXLTQLTXXPALSAVISXFXLGRNIIHGSDSVESA 526
+ SGPVV MVWEG V A L P +GRN+IHGSDSVE+A
Sbjct: 67 IVSGPVVAMVWEGKQVVSTGRKLVGA-TNPLAAEPGTIRGDFAVDIGRNVIHGSDSVENA 125
Query: 527 XKXIGLWFTDTEVVGWTPAXENXVYE 604
K I LWF + + W +YE
Sbjct: 126 RKEIALWFPE-GIAEWRSNQHPWIYE 150
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 134 bits (324), Expect = 1e-31
Identities = 66/136 (48%), Positives = 82/136 (60%)
Frame = +2
Query: 167 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLXKY 346
+IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL +Y
Sbjct: 6 YIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEY 65
Query: 347 MSSGPVVPMVWEGLNVCEDWPSYASAXLTQLTXXPALSAVISXFXLGRNIIHGSDSVESA 526
++SGPVV M WEG V A L P GRN++HGSDS ++
Sbjct: 66 ITSGPVVCMAWEGNGVVASARKLIGA-TNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNG 124
Query: 527 XKXIGLWFTDTEVVGW 574
+ I LWF + E+ W
Sbjct: 125 KREIALWFKEGELCEW 140
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.33
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 233 KKGFKLVGLK-FVWPSEELLQQHYSDLASRPFFPGLXKYMSSGPVVPMVWEGLNVCEDWP 409
KK F + K F++ +L +++ S L FP K S + V EGL EDWP
Sbjct: 808 KKSFDTIAKKMFMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWP 867
Query: 410 S 412
S
Sbjct: 868 S 868
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.33
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 233 KKGFKLVGLK-FVWPSEELLQQHYSDLASRPFFPGLXKYMSSGPVVPMVWEGLNVCEDWP 409
KK F + K F++ +L +++ S L FP K S + V EGL EDWP
Sbjct: 806 KKSFDTIAKKMFMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWP 865
Query: 410 S 412
S
Sbjct: 866 S 866
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 263 FVWPSEELLQQHYSDLASRPFFPGLXKYMSSGPVVPMVWEGLNVCEDWPS 412
F++ +L +++ S L FP K S V V EGL EDWPS
Sbjct: 812 FMYSYNDLPKEYKSCLLYLAIFPKGEKIRRSTLVGRWVAEGLTFREDWPS 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,055
Number of Sequences: 37544
Number of extensions: 259121
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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