Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H16
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    31   0.29 
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    31   0.29 
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   8.3  

>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 45  IFPGLALGIICAGILDISDDFMLLAAEALAEIVSDDDLAYGSLYPPLHMIKDCSVKIAKK 224
           ++P L +  + +    +SD  +  A++ALA +     +A  +L P L   ++ S  I   
Sbjct: 130 LYPALGVACVLSRCKLLSDGMLKAASDALATVPRSLFVADEALLPDLDNAREISRHIVFA 189

Query: 225 IVEHAYNTGKASVQPQPLDT--EEFIRAQMYSVEY 323
           +++ A + G ++V     D   +E+I  + ++ EY
Sbjct: 190 VLKQAISEGMSTVDLPKDDAKLKEWIIEREWNPEY 224


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 45  IFPGLALGIICAGILDISDDFMLLAAEALAEIVSDDDLAYGSLYPPLHMIKDCSVKIAKK 224
           ++P L +  + +    +SD  +  A++ALA +      A  +L P L+  ++ S  I   
Sbjct: 467 LYPALGVACVLSRCKLLSDGMLKAASDALATVPRSLFAADEALLPDLNNAREISRHIVFA 526

Query: 225 IVEHAYNTGKASVQPQPLDT--EEFIRAQMYSVEY 323
           +++ A + G ++V     D   +E+I  + ++ EY
Sbjct: 527 VLKQAVSEGMSTVDLPKDDAKLKEWIIEREWNPEY 561


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  NSLRFIFPGLALGIICAGILDISDD 104
           N+LRF+ PG A       + D+SDD
Sbjct: 30  NTLRFMVPGKATEPFTLSLSDVSDD 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,628
Number of Sequences: 5004
Number of extensions: 53681
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)