Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H16
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    90   2e-18
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp...    29   3.4  
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical...    29   3.4  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = +3

Query: 27  GNSLRFIFPGLALGIICAGILDISDDFMLLAAEALAEIVSDDDL-AYGSLYPPLHMIKDC 203
           GN+  +IFPG+ALG +     +I D   LLAA  +AE VS+  L  Y  +YP L  I++ 
Sbjct: 490 GNNA-YIFPGVALGAVLFRTKNIPDKLFLLAARMVAEAVSEKSLNTYSRVYPRLKDIREL 548

Query: 204 SVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQMYSVEYGAALPPAYPWP 356
           SVKIA ++ E+ Y    A++ P+P D E FIR  +YSVEY   +   Y WP
Sbjct: 549 SVKIAVEVGEYCYRHDLATLHPKPDDMEMFIRQNLYSVEYDELINKTYEWP 599


>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1045

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
 Frame = +3

Query: 303  QMYSVEYGAALPPAYPWPDNQPRVAII*PPHTTTHNRLVSKATL-RTVCLVRVNV-LDNV 476
            Q+ SV+  + +PPA      QP   I+  P  +   RL+SK+ L     L    + +  +
Sbjct: 905  QILSVDLASEMPPAISLAYEQPENDIMHTPPRSRTARLLSKSLLVYAYILAGFGITIGCI 964

Query: 477  KVNETLYAVGTAPLAANVGKRYHSIQIRA-NFYAIENVNSKHTANNVTSLVYVPLY**HE 653
                ++Y     P++  +    H  +I A NF   + +    T  +V     +P+Y  H 
Sbjct: 965  AAYLSVYWYHNIPISDILFTAEHHWKIGAKNFTTSQGLTFDPTPVHVRVHTGLPIYNGHT 1024

Query: 654  LNVSTLLIN 680
             + ST L N
Sbjct: 1025 YSTSTCLGN 1033


>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y105E8A.12b protein.
          Length = 1045

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
 Frame = +3

Query: 303  QMYSVEYGAALPPAYPWPDNQPRVAII*PPHTTTHNRLVSKATL-RTVCLVRVNV-LDNV 476
            Q+ SV+  + +PPA      QP   I+  P  +   RL+SK+ L     L    + +  +
Sbjct: 905  QILSVDLASEMPPAISLAYEQPENDIMHTPPRSRTARLLSKSLLVYAYILAGFGITIGCI 964

Query: 477  KVNETLYAVGTAPLAANVGKRYHSIQIRA-NFYAIENVNSKHTANNVTSLVYVPLY**HE 653
                ++Y     P++  +    H  +I A NF   + +    T  +V     +P+Y  H 
Sbjct: 965  AAYLSVYWYHNIPISDILFTAEHHWKIGAKNFTTSQGLTFDPTPVHVRVHTGLPIYNGHT 1024

Query: 654  LNVSTLLIN 680
             + ST L N
Sbjct: 1025 YSTSTCLGN 1033


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,101
Number of Sequences: 27780
Number of extensions: 323081
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)