Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H14
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.12 |hcn1||anaphase-promoting complex subunit Hcn1|Schi... 31 0.17
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.38
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 29 0.67
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 2.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.7
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 3.6
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 4.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 26 6.3
>SPAC23C11.12 |hcn1||anaphase-promoting complex subunit
Hcn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 80
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 352 DELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKIVLTNSIDS 522
D L + EKLR+ L + LQ+N + SP KKK +R ++I +T DS
Sbjct: 15 DVLAYDEEKLRQTLDSESTTEEALQKNEESTRLSPEKKK---IIRERRIGITQIFDS 68
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/65 (24%), Positives = 36/65 (55%)
Frame = +1
Query: 283 MKQTKITKLFQTKLVARRSSDDCDELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVK 462
M++ K K + R+ + DEL +E++ ++ L EK++E+ L+R + ++S
Sbjct: 272 MEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSA 331
Query: 463 KKSEQ 477
++E+
Sbjct: 332 FENEE 336
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 370 IEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQK 495
+E+L+ KEKQ EL + +R + P KKK ++ + +K
Sbjct: 209 VEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 2.1
Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 2/158 (1%)
Frame = +1
Query: 307 LFQTKLVARRSSDDCDELQDEIEKLRENLKEKQNELFQL--QRNSYKHKSSPVKKKSEQF 480
+ +TK +A SS+ +L+ ++ LK++ ++L ++ Q KH K +E
Sbjct: 395 VLKTK-IATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENL 453
Query: 481 VRPQKIVLTNSIDSLKRNLELMSILTGMEVQSYVVGEHCCVVYHMQHDSDNVVKHGLRIE 660
+V +++ K+N + M+ Q + E + S + K G E
Sbjct: 454 -----LVRIQTLE--KQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEE 506
Query: 661 MQAGANVVPKSSLPLGFNINAVMEEYDNIMMPECLGAI 774
+Q G V+P +S ++ + ++ ++P G++
Sbjct: 507 LQNGTIVLPNNSTVRSNSVKSKKKKKKKPVVPSSSGSL 544
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = +1
Query: 328 ARRSSDDCDELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKIVLT 507
+ + + + L+ ++ L + + + QNE+ + +RN +SS + E +K+
Sbjct: 364 SEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKNIKKL--- 420
Query: 508 NSIDSLKRNLELMSILTGMEVQSYV 582
N +SLK L E+ SY+
Sbjct: 421 NDAESLKSRLLQSRTQMQTELDSYI 445
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 583 VGEHCCVVYHMQHDSDNVVKHGLRIEM-QAGANVVPKSSLPLGFNINAVMEEYDNIMMPE 759
+ + C VV+ H+ DNV L I++ ++ KS L L +N V + + E
Sbjct: 224 LSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDE 283
Query: 760 CLGAIR 777
+R
Sbjct: 284 YQKLVR 289
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 334 RSSDDCDELQDEIEKLR-ENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKIVLTN 510
+ +D L DE K + EN K+ L R KSS KKS R +VL+N
Sbjct: 309 QGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSN 368
Query: 511 SIDSL 525
D +
Sbjct: 369 RYDPI 373
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 448 SSPVKKKSEQFVRPQKIVLTNSIDSLKRNLELMSILTGMEVQS 576
S+P +QF +++L I K +L SIL G+ +QS
Sbjct: 326 SNPFDNPGKQFFDTARLLLPQVIQQCKPSLVQASILMGLYLQS 368
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 334 RSSDDCDELQDEIEKLRENLKE 399
+ ++C ELQ +I LR+ LKE
Sbjct: 31 KQREECKELQSKITNLRKQLKE 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,204
Number of Sequences: 5004
Number of extensions: 49637
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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