Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H14
         (891 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    29   0.25 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.3  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   7.1  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    23   9.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   9.4  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 361 QDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKI 498
           +D   KL E    K NEL+ + R   + K   ++K+ E ++  QK+
Sbjct: 178 RDSALKLIEKKDAKLNELYAVIREEIEPKLEKLRKEREHYIEFQKV 223



 Score = 25.8 bits (54), Expect = 1.8
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +1

Query: 355  ELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKIVLTNSIDSLKRN 534
            +LQD  +K+  N+ +K   L + +   YK      KK  E   +  + ++T+  +  K+ 
Sbjct: 969  KLQDSKDKMSRNVNQKAMVLLEREEEQYKEVMRR-KKVVEDDKKKIQAIITDLDEEKKKK 1027

Query: 535  LEL 543
            L++
Sbjct: 1028 LKV 1030


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 355 ELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKK 468
           ELQ+   +LRE  ++ Q +L + Q+   K K    K K
Sbjct: 644 ELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCK 681



 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 289 QTKITKLFQTKLVARRSSDDCDELQDEIEKLRE 387
           Q +++K  QTK+  +R    C EL   +  + E
Sbjct: 660 QEQLSKYQQTKMKVKRQEQKCKELTARLVNVDE 692


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 313 QTKLVARRSSDDCDEL---QDEIEKLRENLKEKQNEL 414
           Q KL  R   D  ++L    DE++KLR +++E+++ +
Sbjct: 313 QAKLAWRNVIDQEEQLAAVDDELKKLRTSIEEQEHRI 349


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 625 SDNVVKHGLRIEMQAGA-NVVPKSSLPLGFNINAVM 729
           S+ +    LR  +  G  +++PK S P GF+++A +
Sbjct: 659 SERIRNPHLRARLAEGLESLLPKESEPAGFSLSATL 694


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = +1

Query: 283  MKQTKITKLFQTKLVARRSSDDCDELQDEIEKLRENLKEKQNELFQLQR--NSYKHKSSP 456
            +++ KIT+  +  +   R   +   ++ +I  L   LK   N+L   ++  N Y  +   
Sbjct: 689  LQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKNINEYDRQLED 748

Query: 457  VKKKSEQFVRPQKIVLTNSIDSLKRNLELMSILTGM-EVQSYVVGEHC 597
              ++ +Q + P+   +   +   +R++++  I   M  V+  V  E C
Sbjct: 749  FTRELDQ-IGPKISEIERRMQ--QRDMKIQDIKESMNNVEDDVYAEFC 793


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,365
Number of Sequences: 2352
Number of extensions: 11986
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95920632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)