Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H14
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.40 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +1

Query: 304 KLFQTKLVARRSSDDCDELQDE--IEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQ 477
           KL Q ++ +  S +  D+ ++   +++LR +L E +N+  +      K +    +KKS  
Sbjct: 74  KLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENK--EKSNVCLKFEEQKRRKKSLD 131

Query: 478 FVRPQKIVLTNSIDSLKRNLELMSILTGMEVQSYVVGEHC 597
            V   KI+  + IDS K NL+     T       V  E+C
Sbjct: 132 DV---KILRNDRIDSYKSNLKCDKCSTYQSNGEEVCLENC 168


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 453 PSKEEI*TICTSTENSINKL 512
           PSKE I  IC    +S+N L
Sbjct: 29  PSKEPICNICKRVYSSLNSL 48


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 481 VRPQKIVLTNSIDSLKRNLELM-SILTG 561
           V+PQ    +NSI  L++ + L+  IL G
Sbjct: 86  VQPQGTTFSNSISQLRKEVSLLYRILLG 113


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 355 ELQDEIEKLRENLKEKQNELFQLQRN 432
           E  D  EKL   + ++ +  F+LQRN
Sbjct: 215 ETNDRKEKLATGIYQRLSLSFKLQRN 240


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 300 NFRLLHYSYFKYNDYQALFY 241
           N+   +Y+   YN+Y+ L+Y
Sbjct: 100 NYNNYNYNNNNYNNYKKLYY 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,551
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)