Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H13
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 128 6e-30
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 112 3e-25
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 34 0.13
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 33 0.41
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 31 1.2
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 29 3.8
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 6.6
03_02_0243 - 6744164-6744415,6744518-6745135 29 6.6
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 6.6
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 28 8.8
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 28 8.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 128 bits (309), Expect = 6e-30
Identities = 88/221 (39%), Positives = 114/221 (51%), Gaps = 2/221 (0%)
Frame = +1
Query: 187 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 366
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 118
Query: 367 IDAKNTLCEFTGDILRYPSL*RHVGPCIQRFRQTHRQGSPNLGRGLLGHPGVSPSTHGHV 546
ID K T +FTG++L+ P +G + G P L L G S +
Sbjct: 119 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 178
Query: 547 STQKR*FKLVSPLLM**TXXXXXXXXXXXXXXXXXHNEIAAQICRQAGLVK--VPGKSVL 720
++ +S + + HNEIAAQICRQAGLVK GK
Sbjct: 179 YPEEMIQTGISTIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKSLEKGKHAE 237
Query: 721 GRPRGXXSPLCSPLWVSXWKRXXSSSRTXEKNGSMXKRVSF 843
G + + + + V+ + R E+NGSM + F
Sbjct: 238 GGEDDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLF 277
Score = 90.2 bits (214), Expect = 2e-18
Identities = 64/146 (43%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Frame = +3
Query: 468 PSTRVPQSWPRTSWTSRGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAG- 644
P P P G INP R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAG
Sbjct: 152 PIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 211
Query: 645 ----FTSQ*NRRPDL*TGRSCQGSRQVSSWTTTRTXFAIVFAAMGVXMETXXXXXXXXXX 812
+Q R+ L +S + + FAIVFAAMGV MET
Sbjct: 212 PHNEIAAQICRQAGL--VKSLEKGKHAEGGEDDN--FAIVFAAMGVNMETAQFFKRDFEE 267
Query: 813 XXXHGKTCVFX*XXANDPTIXRNFYP 890
+ +F ANDPTI R P
Sbjct: 268 NGSMERVTLFL-NLANDPTIERIITP 292
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 416 TPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGSAHQP 535
TPVS DMLGR+FNGSGKPID GPPIL E +LDI GS+ P
Sbjct: 135 TPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINP 174
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 112 bits (270), Expect = 3e-25
Identities = 53/78 (67%), Positives = 63/78 (80%)
Frame = +1
Query: 187 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 366
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 78
Query: 367 IDAKNTLCEFTGDILRYP 420
ID K T +FTG++L+ P
Sbjct: 79 IDNKYTTVQFTGEVLKTP 96
Score = 89.4 bits (212), Expect = 3e-18
Identities = 61/129 (47%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Frame = +3
Query: 519 GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAG-----FTSQ*NRRPDL*T 683
G INP R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAG +Q R+ L
Sbjct: 138 GSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL-- 195
Query: 684 GRSCQGSRQVSSWTTTRTXFAIVFAAMGVXMETXXXXXXXXXXXXXHGKTCVFX*XXAND 863
+ + S + ++ FAIVFAAMGV MET + +F AND
Sbjct: 196 VKRLEKSDNILE-SSEDENFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFL-NLAND 253
Query: 864 PTIXRNFYP 890
PTI R P
Sbjct: 254 PTIERIITP 262
Score = 62.1 bits (144), Expect = 6e-10
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2
Query: 416 TPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDI 514
TPVS DMLGRVFNGSGKPID GPPIL E +LDI
Sbjct: 95 TPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDI 127
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +1
Query: 652 HNEIAAQICRQAGLVKVPGKS 714
HNEIAAQICRQAGLVK KS
Sbjct: 182 HNEIAAQICRQAGLVKRLEKS 202
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +1
Query: 175 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 354
S+ Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E
Sbjct: 13 SEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYE 69
Query: 355 GTSGI 369
T+G+
Sbjct: 70 ETAGL 74
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 32.7 bits (71), Expect = 0.41
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +1
Query: 202 VSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGI 369
V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+
Sbjct: 60 VLAVSGPVVVADGMGGAAMYELVRVG-NDNLI--GEIIRLEGDSATIQVYEETAGL 112
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 405 HSPXPQSLKTCWAVYSTVPANPSTRVPQSWPRTSWTSRGQPIN-PWSRIYPEEMIQTGIS 581
HS P + K CW+ + A+PS V + + + QP+ P SR
Sbjct: 577 HSKDPTAEKGCWSTAQSRSASPSKEVSRCQSFAAARAHAQPLPLPRSRAMVARTASDITE 636
Query: 582 AIDVMNSIARGQKIPI 629
+ V+ +GQ++P+
Sbjct: 637 SKVVLEKRGKGQQLPL 652
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 273 LYDLRELGELDFIQDDERTVYTRYSLVSEPGLGNEVPGDCQD 148
+YD E+ E + + +E+ + Y + EPGL ++ GD ++
Sbjct: 299 IYDTEEMSESEDEEKEEQRIRKLYEDLEEPGLHEKLFGDVEE 340
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 163 WRLPGHVPWSPGRERSPLPFF 101
WR+ GH+P G R P+ FF
Sbjct: 252 WRVQGHLPQRQGPRRVPIDFF 272
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1
Query: 272 CTISENLGNLTSSKMTRGPFTPDTVL*VSLG 180
C ++E++ L S +T P TPDTVL VS G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 214 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 348
NGP+ + + KF ++ + KLAD T G + G +V V
Sbjct: 321 NGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGDSVAAV 365
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 246 LDFIQDDERTVYTRYSLVSEPGLGNEVPGDCQDMFL 139
+DF+ D E Y + L+ EP L ++V D+FL
Sbjct: 674 IDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFL 709
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 394 FTGDILRYPSL*RHVGPCIQRFRQTHRQGSPNLGRGLLGHPGVSPSTHGH 543
F+GD L S G C R ++HR+ P G L H G + S G+
Sbjct: 242 FSGDFLERLST--GFGDCALRRVESHREPKPKSSAGALAHLGGNHSAAGN 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,350,417
Number of Sequences: 37544
Number of extensions: 562364
Number of successful extensions: 1457
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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