Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H13
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 151 5e-37
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 135 5e-32
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 35 0.069
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 34 0.12
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 31 1.5
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 29 3.4
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 29 6.0
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 29 6.0
U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein ... 28 7.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 7.9
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 151 bits (367), Expect = 5e-37
Identities = 87/189 (46%), Positives = 114/189 (60%)
Frame = +1
Query: 145 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 324
H A+ R++ + PRL Y+TV GVNGPLVIL++VKFP+FSEIV++ L DG+ RSGQVLE+S
Sbjct: 13 HKSAIIRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEIS 72
Query: 325 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRYPSL*RHVGPCIQRFRQTHRQGSPNLGRGL 504
+KAVVQVFEGTSGIDAKNT+CEFTGDILR P +G + +G P L
Sbjct: 73 KNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDF 132
Query: 505 LGHPGVSPSTHGHVSTQKR*FKLVSPLLM**TXXXXXXXXXXXXXXXXXHNEIAAQICRQ 684
L G + + ++ +S + + HNEIAAQI RQ
Sbjct: 133 LDINGQPINPWSRIYPEEMIQTGISAIDV-MNSIARGQKIPIFSASGLPHNEIAAQIVRQ 191
Query: 685 AGLVKVPGK 711
GLV++P +
Sbjct: 192 GGLVQLPDR 200
Score = 113 bits (272), Expect = 2e-25
Identities = 68/124 (54%), Positives = 73/124 (58%)
Frame = +3
Query: 519 GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGFTSQ*NRRPDL*TGRSCQ 698
GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSA+G + G
Sbjct: 137 GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQG---- 192
Query: 699 GSRQVSSWTTTRTXFAIVFAAMGVXMETXXXXXXXXXXXXXHGKTCVFX*XXANDPTIXR 878
G Q+ +T FAIVFAAMGV MET C+F ANDPTI R
Sbjct: 193 GLVQLPDRPHEQTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFL-NLANDPTIER 251
Query: 879 NFYP 890
P
Sbjct: 252 IITP 255
Score = 77.0 bits (181), Expect = 2e-14
Identities = 34/46 (73%), Positives = 36/46 (78%)
Frame = +2
Query: 416 TPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGSAHQPMVTYLP 553
TPVSEDMLGR+FNGSGKPIDKGPP+LAEDFLDI G P P
Sbjct: 103 TPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYP 148
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 135 bits (326), Expect = 5e-32
Identities = 79/190 (41%), Positives = 110/190 (57%)
Frame = +1
Query: 145 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 324
H A+ +++ ++P+LTY+TV GVNGPLVI+ VKFP F+EIV++ L +G +R GQVLE S
Sbjct: 25 HRTALIQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESS 84
Query: 325 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRYPSL*RHVGPCIQRFRQTHRQGSPNLGRGL 504
+KAVVQVFEGT+G+DAK T CEFTGDI R P +G + +G P L
Sbjct: 85 KNKAVVQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDY 144
Query: 505 LGHPGVSPSTHGHVSTQKR*FKLVSPLLM**TXXXXXXXXXXXXXXXXXHNEIAAQICRQ 684
L G + + ++ +S + + HNEIAAQI RQ
Sbjct: 145 LDINGQPINPFNRIYPEEMIQTGISAIDV-MNSIARGQKIPIFSAAGLPHNEIAAQIVRQ 203
Query: 685 AGLVKVPGKS 714
GLV++PG++
Sbjct: 204 GGLVQLPGRN 213
Score = 109 bits (263), Expect = 2e-24
Identities = 69/141 (48%), Positives = 75/141 (53%)
Frame = +3
Query: 468 PSTRVPQSWPRTSWTSRGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGF 647
P + P P GQPINP++RIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAG
Sbjct: 132 PIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 191
Query: 648 TSQ*NRRPDL*TGRSCQGSRQVSSWTTTRTXFAIVFAAMGVXMETXXXXXXXXXXXXXHG 827
+ G G Q+ FAIVFAAMGV MET
Sbjct: 192 PHNEIAAQIVRQG----GLVQLPGRNNETVNFAIVFAAMGVNMETARFFKQDFEECGSMD 247
Query: 828 KTCVFX*XXANDPTIXRNFYP 890
C+F ANDPTI R P
Sbjct: 248 NVCLFL-NLANDPTIERIITP 267
Score = 68.9 bits (161), Expect = 5e-12
Identities = 30/46 (65%), Positives = 34/46 (73%)
Frame = +2
Query: 416 TPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGSAHQPMVTYLP 553
+PVS DMLGR+FNGSGKPIDKGPP+L ED+LDI G P P
Sbjct: 115 SPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYP 160
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 35.1 bits (77), Expect = 0.069
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 190 TYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGI 369
+Y V GV+GP+V +++ E+V++ + G+++ + G A +QV+E TSG+
Sbjct: 6 SYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELV---GEIIRLEGDYATIQVYEETSGV 62
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 419 PVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGSA 526
PV + LGR+ N G+PID+ PI +++F I A
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEA 179
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 555 EEMIQTGISAIDVMNSIARGQKIPIFSAAG 644
+E++ TGI +D++ A+G KI +F AG
Sbjct: 189 QEILVTGIKVVDLLAPYAKGGKIGLFGGAG 218
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 450 STVPANPSTRVPQSWPRTSWTSRGQPINPWSRIYPEEMIQTGISAI--DVMNSIARGQK 620
ST P P+T VPQ + T+ QP+ RI EE I+ + + D+ S+ G +
Sbjct: 248 STEPPQPTTTVPQEAAEPTTTTTLQPLESTRRILGEE-IEKSVENLEKDIEESVKNGSE 305
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 150 PGSLQGLHFPAQAHLQDCIWCKRSSRHLG 236
PG+ Q A H Q C+WC + R G
Sbjct: 39 PGTCQYCKLNAAFHDQKCVWCSHAERKFG 67
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 419 PVSEDMLGRVFNGSGKPID-KGP 484
PV + +LGRV + G PID KGP
Sbjct: 99 PVGDGLLGRVVDALGNPIDGKGP 121
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 419 PVSEDMLGRVFNGSGKPID-KGP 484
PV + +LGRV + G PID KGP
Sbjct: 126 PVGDGLLGRVVDALGNPIDGKGP 148
>U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein 1
protein.
Length = 596
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 431 LQRLGXRRMSPVNSQSVFFASIPDVPSNTWTTALEP-LTSST 309
L RL ++ + N+ S P+VPS T + A EP LT+ST
Sbjct: 496 LARLKSQQSAAANACSAVAVPSPEVPSTTASCASEPILTAST 537
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 353 SNTWTTALEPLTSST*PERRVPSASFSCTISENLGNLTSS--KMTRGPFTP 207
S+T +T E TSST P ++ + T+S TSS TRG F P
Sbjct: 877 SSTGSTTSESTTSSTEPPTTQEESNTTTTLSSTTPFTTSSTESFTRGGFIP 927
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,718,477
Number of Sequences: 27780
Number of extensions: 441739
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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