Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H13
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.41 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.71 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 469 HRQGSPNLGRGLLGHPGVSPSTHGHVST 552
           +R  SP+ G G +GH   +P+ +GH ST
Sbjct: 110 YRSASPSPGMGHMGH---TPTPNGHPST 134


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 466 FAGTVEYTAQHVFRDWGXGECH 401
           FA  +++   H F  +G GEC+
Sbjct: 288 FATIIQFAVVHYFTKYGSGECY 309


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 469 HRQGSPNLGRGLLGHPGVSPSTHG 540
           H   S  LGR     PGV PST G
Sbjct: 287 HSHLSSALGRSACHSPGVYPSTAG 310


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 809 SKVLLEEXXRFHXDTHSGEHNGE 741
           +K +LE+       T  GEHNG+
Sbjct: 110 TKSILEKKPELVDATDPGEHNGD 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,788
Number of Sequences: 438
Number of extensions: 5217
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)