Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H11
         (997 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF458626-1|ABO26063.1|  560|Drosophila melanogaster nicotinic ac...    30   5.7  
AJ554210-1|CAD86936.1|  542|Drosophila melanogaster nicotinic ac...    30   5.7  
AE014298-2836|AAS65409.1|  560|Drosophila melanogaster CG32538-P...    29   7.5  
AE014298-2835|AAF48950.3|  541|Drosophila melanogaster CG32538-P...    29   7.5  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   10.0 
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   10.0 

>EF458626-1|ABO26063.1|  560|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha7 protein.
          Length = 560

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESXPRALSCSDPAAYGY-CPPS 694
           C  F + S+ +++I  ++   R  +T +  +  R   L   P  L    P   GY CPP 
Sbjct: 337 CIMFMVASSVVSTILVLNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPP 396

Query: 695 PSGS 706
           PS S
Sbjct: 397 PSSS 400


>AJ554210-1|CAD86936.1|  542|Drosophila melanogaster nicotinic
           acetylcholine receptorsubunit Dalpha7 protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESXPRALSCSDPAAYGY-CPPS 694
           C  F + S+ +++I  ++   R  +T +  +  R   L   P  L    P   GY CPP 
Sbjct: 315 CIMFMVASSVVSTILVLNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPP 374

Query: 695 PSGS 706
           PS S
Sbjct: 375 PSSS 378


>AE014298-2836|AAS65409.1|  560|Drosophila melanogaster CG32538-PA,
           isoform A protein.
          Length = 560

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESXPRALSCSDPAAYGY-CPPS 694
           C  F + S+ +++I  ++   R  +T +  +  R   L   P  L    P   GY CPP 
Sbjct: 337 CIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPP 396

Query: 695 PSGS 706
           PS S
Sbjct: 397 PSSS 400


>AE014298-2835|AAF48950.3|  541|Drosophila melanogaster CG32538-PB,
           isoform B protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESXPRALSCSDPAAYGY-CPPS 694
           C  F + S+ +++I  ++   R  +T +  +  R   L   P  L    P   GY CPP 
Sbjct: 318 CIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPP 377

Query: 695 PSGS 706
           PS S
Sbjct: 378 PSSS 381


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 302 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 397
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 302 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 397
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,364,423
Number of Sequences: 53049
Number of extensions: 655560
Number of successful extensions: 1576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5037883938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)