Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H11
         (997 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 292 EKTSHTSTLNLKHKMNAIVVV 230
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 573 LKSEVAKPDRTIKIPGVSPWKAXLVRSPVPTLPLTDTVRLLLR 701
           L+SE+A+ +  IK+  +SP    LV + +    L +  RL L+
Sbjct: 175 LRSELAQCESNIKVISISP---DLVETDMTAQWLKENSRLALK 214


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = +2

Query: 533  IGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESXPRALSC---SDPAAYGYCPPSP 697
            +GS   T ++ +  Q R     +D        L+  P A SC   S P      P SP
Sbjct: 1233 VGSVEKTGVSTLRGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSP 1290


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 292 EKTSHTSTLNLKHKM 248
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,820
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)