Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H10
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    28   2.0  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.7  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   3.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   4.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.2  

>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 57  LSNYLVDPE*IIPNSWNPNLSGPILQFTTKMSGSLHKVPKVDIDKSGVFKYILL 218
           LSN + D   +  +  +PN + P +     ++G L+  P+VD+   G+  Y++L
Sbjct: 177 LSNIMTDGNFLKTSCGSPNYAAPEV-----INGKLYAGPEVDVWSCGIVLYVML 225


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 168 LCGVSQTFLW*IVILALINLGSKNLV 91
           LCG SQ  +W IV  A+  LG   ++
Sbjct: 177 LCGASQNMIWLIVCRAIQGLGGGGII 202


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 288 NYHSDIYDEVQGKLIPFDCEPWGGGRISHDP 380
           NYH+ +Y E + ++IP+ C+  G G I   P
Sbjct: 213 NYHNLLYREEEREMIPY-CQKTGVGLIPWSP 242


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 333 PFDCEPWGGGRISHDP 380
           PF C PWG  ++S  P
Sbjct: 395 PFTCNPWGAKKVSPPP 410


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 358 VVEYLMIQTIRRYTSMDTLRPMERQTMRRQPN*SRMHIQITQSQSVMKDTNN 513
           + E LM  + R+ +++DT +  E +  +  P  +R+H    Q Q ++ +  N
Sbjct: 620 ISESLMQNSKRKDSALDTNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRN 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,567
Number of Sequences: 5004
Number of extensions: 56749
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)