Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H10
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical pr...   106   2e-23
U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated k...    29   3.4  

>Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical
           protein F36A2.8 protein.
          Length = 116

 Score =  106 bits (255), Expect = 2e-23
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +3

Query: 159 LHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLRGYKRCNYHSDIYDEVQGKLIPF 338
           L  +  VDID  GVFKYIL++V D   +  +    V+RGY RC++H DI  E +    P 
Sbjct: 3   LADIADVDIDPKGVFKYILIQVTD---NSTKQQKFVVRGYYRCSFHDDILQETKSSA-PS 58

Query: 339 DCEPW--GGGRISHDPDNKKIHIYGYSQAYGKADHEEAAKLIKNAYPDYTITISDEGY 506
           D +    GGGRI HD   K I +YGYS  YG+ADH+ A  ++K  YPDY I  S++GY
Sbjct: 59  DLKLKCVGGGRIKHDEIGKDILVYGYSYGYGRADHQIAVDILKQKYPDYNIHFSNDGY 116


>U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform a protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 57  LSNYLVDPE*IIPNSWNPNLSGPILQFTTKMSGSLHKVPKVDIDKSGVFKYILL 218
           LSNY+ D + +     +PN + P L     +S  L+  P+VD+   GV  Y +L
Sbjct: 168 LSNYMTDGDLLSTACGSPNYAAPEL-----ISNKLYVGPEVDLWSCGVILYAML 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,617
Number of Sequences: 27780
Number of extensions: 312135
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)