Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H09
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 744  PKSPXPPXAXPVAXYFPXXPPPRXXPPKKXPPLXXRGRNPP 866
            P S  PP   P A   P  PPP   PP   P +      PP
Sbjct: 1174 PSSGIPPVPKPAAG-VPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 741  PPKSPXPPXAXPVAXYFPXXPPPRXXPPKKXP 836
            PP S  PP   P +   P  PPP   PP   P
Sbjct: 1192 PPPSEAPPVPKP-SVGVPPVPPPSTAPPVPTP 1222


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 741 PPKSPXPPXAXPVAXYFPXXPPPRXXPPKKXPPLXXRGRNPPXEXXXP 884
           PP +   P   P     P   P    PP   PP    G  PP     P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +3

Query: 741 PPKSPXPPXAXPVAXYFPXXPPPRXXPPKKXP-PLXXRGRNPP 866
           PP  P PP     A   P  P  R  PP   P      GR PP
Sbjct: 337 PP--PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,442
Number of Sequences: 5004
Number of extensions: 22450
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)