Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H09
         (885 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.3  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   3.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   4.1  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    24   7.1  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   9.4  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.4  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 320 PPFXGGXGPPXXXGXXGPPGP 382
           P   G  GP    G  GPPGP
Sbjct: 624 PGLRGEPGPKGEPGLLGPPGP 644



 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/65 (23%), Positives = 19/65 (29%)
 Frame = +3

Query: 306 PXXXXPPXGGXXGPPXXXGXXXPRXXPXXEGXXKNPXXGKXGXPXXXLXXXKTXQKXXPX 485
           P    P   G  G     G    +     +G    P   K G P       +  +K  P 
Sbjct: 500 PGYGIPGQKGNAGMAGFPGLKGQKGERGFKGVMGTPGDAKEGRPGAPGLPGRDGEKGEPG 559

Query: 486 XPGXP 500
            PG P
Sbjct: 560 RPGLP 564


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 17/62 (27%), Positives = 19/62 (30%)
 Frame = +3

Query: 681 GXLXPPKXGESPXXXNWXXXPPKSPXPPXAXPVAXYFPXXPPPRXXPPKKXPPLXXRGRN 860
           G + P      P   N    PP    PP    +    P  PP    P    PP     R 
Sbjct: 60  GKIAPNPFTAGPPKPNISIPPPTMNMPPRPGMIPG-MPGAPPLLMGPNGPLPPPMMGMRP 118

Query: 861 PP 866
           PP
Sbjct: 119 PP 120


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 480 PXXPGXPXFSPXPGGGXGGXPGXKXGAPPP 569
           P  P  P   P P    GG  G   G+ PP
Sbjct: 583 PAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 519 GGGXGGXPGXKXGAPPP 569
           GGG GG  G   G  PP
Sbjct: 394 GGGGGGGDGGSDGKKPP 410


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 568 GGGAPXFXPGXPPXPPP 518
           GGG P   P  PP P P
Sbjct: 193 GGGQPSASPRQPPTPLP 209


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 17/60 (28%), Positives = 20/60 (33%)
 Frame = +2

Query: 200 PKXXGXPPXPKKKXXXXXXXKKKKXXXXXKXKKKIPXXXXPPFXGGXGPPXXXGXXGPPG 379
           P   G    P  K       +K       K +K +P    P   G  GPP   G  G PG
Sbjct: 517 PGPAGLNGLPGMKGDMGPLGEKGDACPVVKGEKGLPGR--PGKTGRDGPPGLTGEKGEPG 574


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,625
Number of Sequences: 2352
Number of extensions: 7819
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)