Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H06
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042...    28   9.1  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    28   9.1  

>12_02_0828 -
           23502276-23503472,23503568-23504002,23504097-23504213,
           23505330-23505396,23505685-23505725,23506161-23506237,
           23506699-23506945
          Length = 726

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +3

Query: 456 RPAAASGIGSLKGGPPVXRXSGDPXGPXXCXXGQQXARTRKGA 584
           R AA S  G+L+GG P     G   G      G    R R GA
Sbjct: 26  RVAADSAAGALRGGAPGAEAGGGGGGGGGAGAGAARRRARGGA 68


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 675  PIKIPGVSPGGXSLXALSCPXPCRXPGYLPAFPPXGPA 788
            P+  PG +P      + S P     PGY P  P   PA
Sbjct: 1537 PVPSPGYTPSSGGGYSPSSPVYSPGPGYSPTSPSYSPA 1574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,026
Number of Sequences: 37544
Number of extensions: 213502
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)