Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_H04
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23147-5|AAC46686.2| 308|Caenorhabditis elegans Hypothetical pr... 35 0.067
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 31 1.4
AF078157-4|AAN84816.1| 365|Caenorhabditis elegans Hypothetical ... 30 2.5
AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine re... 30 2.5
Z81124-6|CAB03375.1| 335|Caenorhabditis elegans Hypothetical pr... 29 3.3
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.3
U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical pr... 29 5.8
U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein. 29 5.8
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 29 5.8
AF022985-16|AAV28323.1| 307|Caenorhabditis elegans Hypothetical... 28 7.7
>U23147-5|AAC46686.2| 308|Caenorhabditis elegans Hypothetical
protein C18H9.1 protein.
Length = 308
Score = 35.1 bits (77), Expect = 0.067
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 426 HNCS-YGEVITS--FDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEM 596
H CS Y +++ + LLK VL +SE S+Y + +L+ +N + + +DKE
Sbjct: 90 HECSVYAQLLPKPLYQQLLKSVLRASEMGASKYDVKRLVDDYVNRLAKNGVLPDVIDKEP 149
Query: 597 VLRMINSLERVIT*MKY 647
+L + E IT Y
Sbjct: 150 ILPRVTLPESEITSQSY 166
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 123 ILEMDIIFKKINSIE-HFDIICNEIINNMYTRSDEKISEI-VENNVIQTAKQELRTIIST 296
I+ +D I ++ I +FD I +I + + K EI V NNV + TII
Sbjct: 333 IINLDAIKQESKDISLNFDTI-KQIEKEEFNKITGKYKEIDVSNNVTNDDIIKEITIIYK 391
Query: 297 NKYDINMIIEHLNTKDWNQEKLIAFL 374
+K D +I++++N K+ + K I L
Sbjct: 392 DKNDSTIILKNMNHKENDNSKKINLL 417
>AF078157-4|AAN84816.1| 365|Caenorhabditis elegans Hypothetical
protein F25E5.16 protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/99 (19%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 63 SVLDLQSIY*NLTNCV-LSKYILEMDIIFKKINSIEHFDIICNEIINNMYTRSDEKISEI 239
++ D++ Y NC+ +I D+I ++ N + + I+C +I+ + ++++ + I
Sbjct: 89 TIQDIEHHYEMKRNCMSCPPFIKWKDLISRENNYVRNGRIVCEVLISEVPKKANKNQAVI 148
Query: 240 VENNVIQTAKQELRTIISTNKYDINMIIEHLNTKDWNQE 356
V+ + L ++ +K+ +NM + +K + +E
Sbjct: 149 VKE---YPGIRNLEILVEKSKFHVNMELLAFTSKFFEKE 184
>AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 67 protein.
Length = 282
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 382 NKSKKAISFS*FQSLV-FKCSIIMLMSYLFVEMIVRSSCFAV*ITLFSTISEIFSSLRVY 206
+KS ++ +S F + + + CSII+ Y+ MI ++ I + I +R
Sbjct: 38 SKSDMSLVYSRFAADIGYSCSIIVFKLYVLAGMISKTFILKNIIFFVIRATVILGIIRTS 97
Query: 205 MLFIISL 185
+LFIISL
Sbjct: 98 LLFIISL 104
>Z81124-6|CAB03375.1| 335|Caenorhabditis elegans Hypothetical
protein T21B4.8 protein.
Length = 335
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 388 FFNKSKKAISFS*FQSLVFKCSIIMLMSYLFVEMIVRSSCFAV*ITLFSTISEIFSSLRV 209
FF S ++F F S + + S EM S+C + +FST ++I S+ R
Sbjct: 187 FFEPSTLILAFDGFSETYIIFSYVFMFSIAIFEMTFFSAC-CIYYLVFSTTTQISSTTRK 245
Query: 208 YML 200
+ L
Sbjct: 246 FQL 248
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = +3
Query: 60 GSVLDLQSIY*NLTNCVLSKYILEMDIIFKKINSIEHFDIICNEIINNMYTRSDEKISEI 239
G++++ + + ++ C + LE D I K + I CNEI+ + + D+K+ E
Sbjct: 259 GAMIEYREVEKSIAECEKHRKNLE-DRIKKDRSQISQMQRSCNEILAKVQEKGDKKLME- 316
Query: 240 VENNVIQTAKQELRT 284
+++Q AK +L +
Sbjct: 317 ---DMMQRAKAKLES 328
>U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical
protein C33G8.10 protein.
Length = 347
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +3
Query: 120 YILEMDIIFKKINSIEHFDIICNEIINNMYTRSDEKISEIVENNVIQTAKQELRTIISTN 299
Y + I FKK++ IE+ I + ++ YT E+ ++ + NV + ++EL+ + +
Sbjct: 238 YETAVPIHFKKLDKIEYMAIFLLLLFDDAYTNISEEGVKLCQ-NVRKVVQRELKGYQTDS 296
Query: 300 KYDINMIIEHLNT 338
D +E ++T
Sbjct: 297 NCDEMRFVETMDT 309
>Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical
protein F13G3.8 protein.
Length = 423
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 96 LTNCVLSKYILEMDIIFKKINSIEHFDIICNEIINNMYTRSDEKISEIV 242
L+ L K+ ++ I+ K IN+ DI+C EI+ M+ E+ +++V
Sbjct: 345 LSEFCLHKFTPDIIILLKMINN-HTGDIVCTEIVGRMWNEFLERDAKLV 392
>U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein.
Length = 423
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 96 LTNCVLSKYILEMDIIFKKINSIEHFDIICNEIINNMYTRSDEKISEIV 242
L+ L K+ ++ I+ K IN+ DI+C EI+ M+ E+ +++V
Sbjct: 345 LSEFCLHKFTPDIIILLKMINN-HTGDIVCTEIVGRMWNEFLERDAKLV 392
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 28.7 bits (61), Expect = 5.8
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Frame = +3
Query: 183 CNEIINNMYTRSDEKISEIVENNVIQTAK----QELRTII-STNKYDINMIIEHLNTK-- 341
C E + N Y + I E V VI+ A+ +E + ST K +N++I +
Sbjct: 157 CYEFVKN-YDTILKHIKEEVRVAVIKAAQPLTHEEFDALDESTPKLSLNVLISMWKKEFS 215
Query: 342 DWNQEKLIAFLDLLKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQY-P 518
DW E+ F+D LK S I+ S+ Y E++ +K++ ++ + P
Sbjct: 216 DWKDEEFKYFIDFLK---SQIIEFSMQTRRERYLEMVLFHKRFVKIISKIMDNHPELFMP 272
Query: 519 ILQLITSSINFNGEANTMIYDLDKEMVLRMINSLERVIT*MKY 647
Q T+ N Y+ D++MV+R + L + I MKY
Sbjct: 273 YNQ--TNHPNVPIAVRVFTYE-DRKMVMR--SELFKAIN-MKY 309
>AF022985-16|AAV28323.1| 307|Caenorhabditis elegans Hypothetical
protein T15B7.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 498 SKTSQYPILQLITSSINFNGEANTMIYDL 584
SKT YP+L L N G A+T YDL
Sbjct: 199 SKTQNYPLLDLTMDWANPIGNASTAWYDL 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,920
Number of Sequences: 27780
Number of extensions: 341312
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -