Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_H04
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   8.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 645 YYTFW*NEELKYNSW 689
           Y   W N +LKYN+W
Sbjct: 261 YLIKWKNWDLKYNTW 275


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 NEIINNMYTRSDEKISEIVENNVIQTAKQELRTIISTN 299
           N+I++   T   E +    ENN + T  +   T++ TN
Sbjct: 30  NDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTN 67


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 384 KKKLSDIVLMSIYHHNCS 437
           KK +SD+V+  + H N S
Sbjct: 217 KKAMSDLVICKLSHSNAS 234


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 384 KKKLSDIVLMSIYHHNCS 437
           KK +SD+V+  + H N S
Sbjct: 217 KKAMSDLVICKLSHSNAS 234


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 SKYILEMDIIFKKIN 158
           +KY+++ D+IF  IN
Sbjct: 143 AKYLMDSDVIFVTIN 157


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 SKYILEMDIIFKKIN 158
           +KY+++ D+IF  IN
Sbjct: 14  AKYLMDSDVIFVTIN 28


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 SKYILEMDIIFKKIN 158
           +KY+++ D+IF  IN
Sbjct: 143 AKYLMDSDVIFVTIN 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,940
Number of Sequences: 438
Number of extensions: 4662
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)